DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpIIIC160 and RPO31

DIOPT Version :9

Sequence 1:NP_001096987.2 Gene:RpIIIC160 / 32524 FlyBaseID:FBgn0030687 Length:1383 Species:Drosophila melanogaster
Sequence 2:NP_014759.1 Gene:RPO31 / 854283 SGDID:S000005642 Length:1460 Species:Saccharomyces cerevisiae


Alignment Length:1464 Identity:665/1464 - (45%)
Similarity:911/1464 - (62%) Gaps:124/1464 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KKISHVQFGISGADEIQQEALVRIISKNLY--QAQRQPVPYGVLDRRMGISTKDAMCETCGQGLN 75
            |:|..::|....|.:|..::.|.:.:::|:  :..|.|...|.||.:||:|:....|.||...|.
Yeast    11 KRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCHGNLA 75

  Fly    76 ECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYLGKKAL 140
            .|.||||:|.|||||||||:|::||.|||.|||.|:.::|...|::.:..:|..|....|.:..:
Yeast    76 SCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGI 140

  Fly   141 HVQMLAKAKKVTKCPHCGSPNGGVKK-----GPGLLKILHDPYK--GRKM---DSLFTSNMNEML 195
            ..::|.:.||..:|.|||:.||.|||     |...|||:||.::  |:|.   ..::.....|:|
Yeast   141 LKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVL 205

  Fly   196 RSTQTNRDLNSTLGNY--STAEELTPLMVLDLFEQIPQRDVALLGMCSHDA-----HPKHLIVTR 253
            ..       |..|..|  ...::|.||..|:||:||...|..|||:   ||     .|:..|...
Yeast   206 AH-------NPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGI---DATVPSGRPETYIWRY 260

  Fly   254 VFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 318
            :..||.||||||:.:....:.|||||:|.:||:..:.:|:..:..|..|..:.|.||:|||.||:
Yeast   261 LPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAM 325

  Fly   319 YFHSE------ISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMIN 377
            |.:|:      :.|........|..||..|||||||||||.|||||||||||||||||||||.|:
Yeast   326 YINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSID 390

  Fly   378 QVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQE 442
            :|.||.||||:|||||:|...|...::||:.|||::||||||:.:|....::.|.||:|.|:|:.
Yeast   391 EVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKN 455

  Fly   443 LKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLH 507
            |:.||||||||.|||:||||||||||::||:.|.||::|.||||.|||.||||||||||||||||
Yeast   456 LQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLH 520

  Fly   508 LPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLA 572
            :||||||||||:.|||.::||:|||:||.:||||||||||.||::.|:.|..:....||.:..  
Yeast   521 VPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMM-- 583

  Fly   573 NEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNK------DLCS 631
             .|...|..:||||::||..||||||:||||::||.:|.|.:|:..|.:.:...|      ::..
Yeast   584 -SDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQ 647

  Fly   632 NDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSF 696
            ||.::.||.|:::.|||||:.:|.|.|..:||.:|||:|...|..||.|:|::.:.||.|||||.
Yeast   648 NDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSI 712

  Fly   697 GISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQA 761
            ||:||||:..|.|.||.|:...|.||:|.|.|...|.|:.||||..|:|||:.:...||.:||:.
Yeast   713 GINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEV 777

  Fly   762 AKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
            ...|..||...|:.||||..|||||.:|:|||:|.||||.|||.|||:||::|:||||.::|..|
Yeast   778 GDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842

  Fly   827 AARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNA 891
            .::|||:|||:|||:|.||.||.::|||||||||||||||||:.|||:|.||||...||.|||.:
Yeast   843 QSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS 907

  Fly   892 VNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDNLRAQHPQGKDRPL-------NAEEMSEALET 949
            .|.:|...||||||||:.||...:||:....:|:........:|:.|       .|.|:...||.
Yeast   908 ANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEE 972

  Fly   950 L---------------LRTPEFAEARD---DFKLDVRNHINTVSKRIGQLQK------------R 984
            .               |...|:.:..|   ||...:|.:||..:..:..|:|            :
Yeast   973 RLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAK 1037

  Fly   985 YEKCID-----------LCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGT 1038
            ..:.||           ...|:..::.:.:.:|:.....:|.:|..|||||:|||.|||||||||
Yeast  1038 ELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGT 1102

  Fly  1039 QMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLA 1103
            ||||||||||||||||:|.|||||.|||||:|.||||||.|.|.|.:....||.||.|:|||.|:
Yeast  1103 QMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLS 1167

  Fly  1104 ELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILK-SRMRVKPTQVEVVASQSRIV 1167
            :::.||:.|......::.:.:|:..|..|.|.:.::.|..:|.: |:::::.:.|.:: .:.||.
Yeast  1168 DVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNII-GKDRIA 1231

  Fly  1168 VRV--EATRTSTINA------------ELARLALSLQNVVVAGLPNINRAVIAV-DDARQPPTYK 1217
            :.|  |..:..:|:.            .:.:|..:|.:|||.|||:|:||||.: ||.::    :
Yeast  1232 INVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKR----E 1292

  Fly  1218 LCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIML 1282
            |.:||||||||:.|.||:|.||.:|::.|::..|||||||..|:.||...|..||||||.|||.|
Yeast  1293 LLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQL 1357

  Fly  1283 LASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPAC 1347
            |...||.:||||||||.||:|||:||..|||||||.|||||||:|.:.||:.||||.||||....
Yeast  1358 LGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMS 1422

  Fly  1348 IGTGIFKLLQQHEDKQVPPIEPTICSSLNLLPSK 1381
            ||||.||:           ::.|..|..:|:|.:
Yeast  1423 IGTGSFKV-----------VKGTNISEKDLVPKR 1445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC160NP_001096987.2 PRK08566 13..919 CDD:236292 457/936 (49%)
RNAP_III_RPC1_N 24..889 CDD:259847 438/895 (49%)
RNA_pol_Rpb1_5 839..1304 CDD:282807 219/528 (41%)
RNAP_III_Rpc1_C 1013..1353 CDD:132723 181/355 (51%)
RPO31NP_014759.1 RNAP_III_RPC1_N 21..905 CDD:259847 438/896 (49%)
rpoC2 789..>1114 CDD:235052 142/324 (44%)
RNAP_III_Rpc1_C 1077..1428 CDD:132723 181/355 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344440
Domainoid 1 1.000 354 1.000 Domainoid score I137
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5124
Inparanoid 1 1.050 1144 1.000 Inparanoid score I17
Isobase 1 0.950 - 0 Normalized mean entropy S1141
OMA 1 1.010 - - QHG53760
OrthoFinder 1 1.000 - - FOG0000819
OrthoInspector 1 1.000 - - oto99452
orthoMCL 1 0.900 - - OOG6_100210
Panther 1 1.100 - - LDO PTHR19376
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1189
SonicParanoid 1 1.000 - - X3228
TreeFam 1 0.960 - -
1615.740

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