DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpIIIC160 and RPO21

DIOPT Version :9

Sequence 1:NP_001096987.2 Gene:RpIIIC160 / 32524 FlyBaseID:FBgn0030687 Length:1383 Species:Drosophila melanogaster
Sequence 2:NP_010141.1 Gene:RPO21 / 851415 SGDID:S000002299 Length:1733 Species:Saccharomyces cerevisiae


Alignment Length:1511 Identity:513/1511 - (33%)
Similarity:765/1511 - (50%) Gaps:202/1511 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPKEQFRASALNKKISHVQFGISGADEIQQEALVRI-ISKNLYQAQRQPVPYGVLDRRMGISTKD 64
            |..:|:.::.| :.:..||||:...:|::..::.:| ..:.:.:.|.:....|:.|.|:|...::
Yeast     1 MVGQQYSSAPL-RTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN 64

  Fly    65 AMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHN 129
            ..|:||.:|:|||.||||::|||.||||:|.......:.:.:|..|..::| .|..:|..:.|..
Yeast    65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLL-DEHNELMRQALAI 128

  Fly   130 PNFSYLGKKALHVQMLAKAKKV--TKCPH------------CGSPNGGVKKGPGLLKILHDPYKG 180
            .:..   |:...:..|.|.|.|  |..|.            ||:....::|..  ||::....|.
Yeast   129 KDSK---KRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDG--LKLVGSWKKD 188

  Fly   181 RKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAH 245
            |.     |.:.:|            ..|...||.|      :|::|:.|..:|...||.....:.
Yeast   189 RA-----TGDADE------------PELRVLSTEE------ILNIFKHISVKDFTSLGFNEVFSR 230

  Fly   246 PKHLIVTRVFVPPACIRPSV-LSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDW 309
            |:.:|:|.:.|||..:|||: .:|.:.|  |||||.|.::||..|..::.....|.....|.|..
Yeast   231 PEWMILTCLPVPPPPVRPSISFNESQRG--EDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 293

  Fly   310 DFLQLHVALYFHSEISGIPINMAPKKTTR---GIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPD 371
            ..||.|||.|..::|:|.|  .|.:|:.|   .|..|||||:||.|.||.|||||||.|||||.|
Yeast   294 SLLQFHVATYMDNDIAGQP--QALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGD 356

  Fly   372 PNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNR 436
            |||.::|||||..:||.|||||.|.|.||..:.:||||||:.||||.|| .|.|..:..|.|..|
Yeast   357 PNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKR 420

  Fly   437 EKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDG 501
            ....| |:.|..||||:.|.|.|||||||||||||:|.||.||.|..|||.|....:||||||||
Yeast   421 AGDIQ-LQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDG 484

  Fly   502 DEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL 566
            ||||||:||:||.|||...|......:|:|::.:..:...||.:.|...||.::.|:..::.:.:
Yeast   485 DEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNM 549

  Fly   567 AACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCS 631
             ..::.:.|..    :|.||::||:.||:|||:.|:.: ||.   :.|...::|...     |..
Yeast   550 -LYWVPDWDGV----IPTPAIIKPKPLWSGKQILSVAI-PNG---IHLQRFDEGTTL-----LSP 600

  Fly   632 NDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSF 696
            .|:.:.|.:.:::.||::|.|:||.....| :::.|:.|.....|....:.::.:::|.:.|||.
Yeast   601 KDNGMLIIDGQIIFGVVEKKTVGSSNGGLI-HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFST 664

  Fly   697 GISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQA 761
            ||.|.......::.....:.....|..:..:..:|..|..:.|.|..|:.|..::|.|:..|::|
Yeast   665 GIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKA 729

  Fly   762 AKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
            .:.....|...|:...|.::|||||.|||:||.||||||::.|||:..||.:|.||||.:....|
Yeast   730 GRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSP 794

  Fly   827 AARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNA 891
            .::|||:||:..||||.|||||.|.|||||:|||||||||||:||||||.|||::||||.|.||:
Yeast   795 ESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNS 859

  Fly   892 VNEMVDTIYGGDGLDPVSMETRNKPVDLV----------HQYDNLRAQHPQGKDRPLNAEEMSEA 946
            :..::..|||.||:|...:|.::  :|.:          ::.|.|...|...   |...|..||.
Yeast   860 LGNVIQFIYGEDGMDAAHIEKQS--LDTIGGSDAAFEKRYRVDLLNTDHTLD---PSLLESGSEI 919

  Fly   947 L-------------ETLLRTPEF-------AEARDDFKLDVRN---------HIN-------TV- 974
            |             :.|::..:|       .||.....:::|.         ||:       |: 
Yeast   920 LGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIK 984

  Fly   975 ------------------SKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVR-----------RI 1010
                              ...|.|..:|....:..|.....|.|.::||..|           .|
Yeast   985 DIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNI 1049

  Fly  1011 NDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTP 1075
            ..::.|:|..||..||.:||||||||.|||||.|||||||||..:|.||||:.||:|..|.:.||
Yeast  1050 EAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTP 1114

  Fly  1076 IITAELENCHS--MEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVDMARIKL------- 1131
            .:|..||..|:  .|.|:.:::.||.|||..::...|:...|......|..|...|:|       
Yeast  1115 SLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDE 1179

  Fly  1132 -----------LGLHIDLDTIVFSILKSRM-----RVKPT---QVEVVASQ---SRIVVRVEATR 1174
                       ..|.::||....:.....|     |:|.|   .:.|:.|:   .::::|....|
Yeast  1180 EAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR 1244

  Fly  1175 TSTINAE--------LARLA-LSLQNVVVAGLPNINRAVIAVDDARQP---------PTYKLCIE 1221
            ..:::||        |.::. ..|:|:.:.|:.||.|.|:...|.:.|         |.:.|..:
Yeast  1245 PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETD 1309

  Fly  1222 GYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQ 1286
            |..|.:|:...|:...|..:|:..:|.:.|||||.|..:..|:..|:...|..|::||:.||...
Yeast  1310 GVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDV 1374

  Fly  1287 MTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1351
            ||.:|.:..:||||..:.........|||:|.:.||:|....:.|...||||.:|||..|.||||
Yeast  1375 MTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTG 1439

  Fly  1352 IFKLLQQHED--KQVP 1365
            .|.::...|.  |.:|
Yeast  1440 AFDVMIDEESLVKYMP 1455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC160NP_001096987.2 PRK08566 13..919 CDD:236292 350/924 (38%)
RNAP_III_RPC1_N 24..889 CDD:259847 337/883 (38%)
RNA_pol_Rpb1_5 839..1304 CDD:282807 185/589 (31%)
RNAP_III_Rpc1_C 1013..1353 CDD:132723 129/388 (33%)
RPO21NP_010141.1 RNAP_II_RPB1_N 15..853 CDD:259848 338/887 (38%)
RNA_pol_Rpb1_6 873..1056 CDD:398590 29/187 (16%)
RNAP_II_Rpb1_C 1035..1446 CDD:132720 132/410 (32%)
RNA_pol_Rpb1_R 1698..1709 CDD:398599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000819
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100210
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.710

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