Sequence 1: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_010141.1 | Gene: | RPO21 / 851415 | SGDID: | S000002299 | Length: | 1733 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1511 | Identity: | 513/1511 - (33%) |
---|---|---|---|
Similarity: | 765/1511 - (50%) | Gaps: | 202/1511 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MPKEQFRASALNKKISHVQFGISGADEIQQEALVRI-ISKNLYQAQRQPVPYGVLDRRMGISTKD 64
Fly 65 AMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHN 129
Fly 130 PNFSYLGKKALHVQMLAKAKKV--TKCPH------------CGSPNGGVKKGPGLLKILHDPYKG 180
Fly 181 RKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAH 245
Fly 246 PKHLIVTRVFVPPACIRPSV-LSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDW 309
Fly 310 DFLQLHVALYFHSEISGIPINMAPKKTTR---GIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPD 371
Fly 372 PNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNR 436
Fly 437 EKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDG 501
Fly 502 DEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL 566
Fly 567 AACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCS 631
Fly 632 NDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSF 696
Fly 697 GISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQA 761
Fly 762 AKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
Fly 827 AARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNA 891
Fly 892 VNEMVDTIYGGDGLDPVSMETRNKPVDLV----------HQYDNLRAQHPQGKDRPLNAEEMSEA 946
Fly 947 L-------------ETLLRTPEF-------AEARDDFKLDVRN---------HIN-------TV- 974
Fly 975 ------------------SKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVR-----------RI 1010
Fly 1011 NDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTP 1075
Fly 1076 IITAELENCHS--MEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVDMARIKL------- 1131
Fly 1132 -----------LGLHIDLDTIVFSILKSRM-----RVKPT---QVEVVASQ---SRIVVRVEATR 1174
Fly 1175 TSTINAE--------LARLA-LSLQNVVVAGLPNINRAVIAVDDARQP---------PTYKLCIE 1221
Fly 1222 GYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQ 1286
Fly 1287 MTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1351
Fly 1352 IFKLLQQHED--KQVP 1365 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 350/924 (38%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 337/883 (38%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 185/589 (31%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 129/388 (33%) | ||
RPO21 | NP_010141.1 | RNAP_II_RPB1_N | 15..853 | CDD:259848 | 338/887 (38%) |
RNA_pol_Rpb1_6 | 873..1056 | CDD:398590 | 29/187 (16%) | ||
RNAP_II_Rpb1_C | 1035..1446 | CDD:132720 | 132/410 (32%) | ||
RNA_pol_Rpb1_R | 1698..1709 | CDD:398599 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100210 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.710 |