DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpIIIC160 and NRPD1A

DIOPT Version :9

Sequence 1:NP_001096987.2 Gene:RpIIIC160 / 32524 FlyBaseID:FBgn0030687 Length:1383 Species:Drosophila melanogaster
Sequence 2:NP_001185298.1 Gene:NRPD1A / 842605 AraportID:AT1G63020 Length:1453 Species:Arabidopsis thaliana


Alignment Length:1494 Identity:331/1494 - (22%)
Similarity:564/1494 - (37%) Gaps:406/1494 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCG-QGLNECI 78
            ::.:.|.||..::..:.:::.:           ..|..|.|.|:|:...|::|.||| :....|.
plant    15 LTSIGFSISNNNDRDKMSVLEV-----------EAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCE 68

  Fly    79 GHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYLGKKALHVQ 143
            ||||.::.|..:.:....:....:|..||..|.::  :.:..|:.|.:.....:..|......::
plant    69 GHFGVINFAYSIINPYFLKEVAALLNKICPGCKYI--RKKQFQITEDQPERCRYCTLNTGYPLMK 131

  Fly   144 MLAKAKKVTKCPHCGSPNGGV-----------KKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRS 197
            .....|:|.:       ..|:           .|..|:|.:..|.:.....|    ||::|..  
plant   132 FRVTTKEVFR-------RSGIVVEVNEESLMKLKKRGVLTLPPDYWSFLPQD----SNIDESC-- 183

  Fly   198 TQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVAL---LGMCSHDAHPKHLIVTRVFVPPA 259
                  |..|....:.|:....|:.:|  :::.::|:.:   ||:.|....|....||.:     
plant   184 ------LKPTRRIITHAQVYALLLGID--QRLIKKDIPMFNSLGLTSFPVTPNGYRVTEI----- 235

  Fly   260 CIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIEL---IHEDWDFLQLHVALYFH 321
                 |.....|....|:.|....:::...         |..:||   :.|...:.:|.......
plant   236 -----VHQFNGARLIFDERTRIYKKLVGFE---------GNTLELSSRVMECMQYSRLFSETVSS 286

  Fly   322 SEISGIPINMAPKKTTRGIVQRLKGKQGRFRCN-LSGKRVDFSGRTVISPDPNLMINQVGVPVRV 385
            |:.|..|..   ||:.   ..:|.|.  ||..: |.|||.|.:.|||:..||:|.:|::|:|..:
plant   287 SKDSANPYQ---KKSD---TPKLCGL--RFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESI 343

  Fly   386 AKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQ--ELKCGDV 448
            ||.|...|.:|..|   ...||         .::|.....:.:.::..|:|....|  :|:.||.
plant   344 AKRLQVSEHLNQCN---KERLV---------TSFVPTLLDNKEMHVRRGDRLVAIQVNDLQTGDK 396

  Fly   449 VERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRT-FRFNECACTPYNADFDGDEMNLHLPQTE 512
            :.|.|.|||.||.||.||:|:.|::....::.|..: ...|...|.|:..|||||.::.::||:.
plant   397 IFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSI 461

  Fly   513 EARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLL-TQKEVFLTKEEAMQLAA-CFLANED 575
            :|:.|...|:.....|:..:||..|::..||.:|..||: .:|..:|.:.:..||.. |      
plant   462 QAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYC------ 520

  Fly   576 STMHIKLPPPALLK-------PRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCSND 633
               ..:|||||::|       |:  |||.|:|.:|..|..|....||.|                
plant   521 ---PFQLPPPAIIKASPSSTEPQ--WTGMQLFGMLFPPGFDYTYPLNNV---------------- 564

  Fly   634 SWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGI 698
               .:.|.||:......|.:..|....|..||..|.|:  ....::....:.|.:|..||.|..:
plant   565 ---VVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKGK--VLDIIYSAQEMLSQWLLMRGLSVSL 624

  Fly   699 SDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETL----------------- 746
            :|:..|..|...|.|            .|.:..|..:.:..|..::.:                 
plant   625 ADLYLSSDLQSRKNL------------TEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDKEE 677

  Fly   747 ESV-------MLRELSAIREQAAKTCFAELH------------PTNSALIMALSGSKGSNINISQ 792
            :||       ..|:.||...:.|.:.|.:.:            .:||.|||:.:||||:...:.|
plant   678 DSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQ 742

  Fly   793 MIACVGQQ--AISGKRVPNGF--ENRALPHFERHSAIPAAR-------------GFVQNSFYSGL 840
            ...|:|.|  |:|   :..||  |.......:.:|.:..|:             |.::|||.:||
plant   743 HSMCIGLQNSAVS---LSFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGL 804

  Fly   841 TPTEFFFHTMAGRE----GLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIY 900
            .|.|.|.|::..|:    |..|.      .|.|.|||:..:.|:...|||||||:. |::|...|
plant   805 NPLESFVHSVTSRDSSFSGNADL------PGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTY 863

  Fly   901 GGDG-LDPVSMETRNKPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFK 964
            ..|| ::.::.|....                      |:|..:|||..:.|..|          
plant   864 ETDGPVEDITGEALGS----------------------LSACALSEAAYSALDQP---------- 896

  Fly   965 LDVRNHINTVSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIA 1029
                                          |..|.|..||..         :.|.|.|:..|.  
plant   897 ------------------------------ISLLETSPLLNL---------KNVLECGSKKGQ-- 920

  Fly  1030 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEF-ARQV 1093
                    .:.|:..:                :.|.::..|              |..|: :.::
plant   921 --------REQTMSLY----------------LSEYLSKKK--------------HGFEYGSLEI 947

  Fly  1094 KARIEKTTLAEL----------SSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSI--- 1145
            |..:||.:.:|:          ||..:|...|:.|:..|...:.:.|    .:..:::|.|:   
plant   948 KNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRK----QLSAESVVSSLNEQ 1008

  Fly  1146 LKSRMRVKPTQVEVV----------ASQSR---------IVVRVEATRTSTINAELARLAL--SL 1189
            .|||.|  ..::::|          :|..:         .|..|||::.|.:..:..||.|  .|
plant  1009 YKSRNR--ELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLELDAIRLVLIPFL 1071

  Fly  1190 QNVVVAGLPNINRAVIAVDDARQPPTYK---LCIEGYGLRDVIATYGVVGK-------------- 1237
            .:..|.|...|.:..|...|..:.|...   |..|.| |:  :..||..||              
plant  1072 LDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELY-LK--VTMYGDRGKRNCWTALLETCLPI 1133

  Fly  1238 -------RTRSNNI---CEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGE 1292
                   |:..:||   |.:|   ||:|.|:|.::.:...:...|..:...|::|:|..::..||
plant  1134 MDMIDWGRSHPDNIRQCCSVY---GIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGE 1195

  Fly  1293 VLGITRHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1351
            .:.:...|.:|.|:     :.|..|.|...:.....||..|..|.:.|..:.:..|.....|||
plant  1196 FVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTG 1259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC160NP_001096987.2 PRK08566 13..919 CDD:236292 237/993 (24%)
RNAP_III_RPC1_N 24..889 CDD:259847 225/952 (24%)
RNA_pol_Rpb1_5 839..1304 CDD:282807 108/532 (20%)
RNAP_III_Rpc1_C 1013..1353 CDD:132723 82/406 (20%)
NRPD1ANP_001185298.1 RNAP_IV_RPD1_N 23..851 CDD:259849 226/953 (24%)
RNAP_IV_NRPD1_C 874..1266 CDD:132724 95/509 (19%)
DUF3223 1349..1419 CDD:371580
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000819
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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