Sequence 1: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001185298.1 | Gene: | NRPD1A / 842605 | AraportID: | AT1G63020 | Length: | 1453 | Species: | Arabidopsis thaliana |
Alignment Length: | 1494 | Identity: | 331/1494 - (22%) |
---|---|---|---|
Similarity: | 564/1494 - (37%) | Gaps: | 406/1494 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 ISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCG-QGLNECI 78
Fly 79 GHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYLGKKALHVQ 143
Fly 144 MLAKAKKVTKCPHCGSPNGGV-----------KKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRS 197
Fly 198 TQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVAL---LGMCSHDAHPKHLIVTRVFVPPA 259
Fly 260 CIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIEL---IHEDWDFLQLHVALYFH 321
Fly 322 SEISGIPINMAPKKTTRGIVQRLKGKQGRFRCN-LSGKRVDFSGRTVISPDPNLMINQVGVPVRV 385
Fly 386 AKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQ--ELKCGDV 448
Fly 449 VERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRT-FRFNECACTPYNADFDGDEMNLHLPQTE 512
Fly 513 EARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLL-TQKEVFLTKEEAMQLAA-CFLANED 575
Fly 576 STMHIKLPPPALLK-------PRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCSND 633
Fly 634 SWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGI 698
Fly 699 SDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETL----------------- 746
Fly 747 ESV-------MLRELSAIREQAAKTCFAELH------------PTNSALIMALSGSKGSNINISQ 792
Fly 793 MIACVGQQ--AISGKRVPNGF--ENRALPHFERHSAIPAAR-------------GFVQNSFYSGL 840
Fly 841 TPTEFFFHTMAGRE----GLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIY 900
Fly 901 GGDG-LDPVSMETRNKPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFK 964
Fly 965 LDVRNHINTVSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIA 1029
Fly 1030 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEF-ARQV 1093
Fly 1094 KARIEKTTLAEL----------SSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSI--- 1145
Fly 1146 LKSRMRVKPTQVEVV----------ASQSR---------IVVRVEATRTSTINAELARLAL--SL 1189
Fly 1190 QNVVVAGLPNINRAVIAVDDARQPPTYK---LCIEGYGLRDVIATYGVVGK-------------- 1237
Fly 1238 -------RTRSNNI---CEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGE 1292
Fly 1293 VLGITRHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1351 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 237/993 (24%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 225/952 (24%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 108/532 (20%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 82/406 (20%) | ||
NRPD1A | NP_001185298.1 | RNAP_IV_RPD1_N | 23..851 | CDD:259849 | 226/953 (24%) |
RNAP_IV_NRPD1_C | 874..1266 | CDD:132724 | 95/509 (19%) | ||
DUF3223 | 1349..1419 | CDD:371580 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |