DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpIIIC160 and NRPA1

DIOPT Version :9

Sequence 1:NP_001096987.2 Gene:RpIIIC160 / 32524 FlyBaseID:FBgn0030687 Length:1383 Species:Drosophila melanogaster
Sequence 2:NP_191325.1 Gene:NRPA1 / 824935 AraportID:AT3G57660 Length:1670 Species:Arabidopsis thaliana


Alignment Length:1732 Identity:455/1732 - (26%)
Similarity:705/1732 - (40%) Gaps:475/1732 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQGLNECIG 79
            :..|:|......::::.:.:::.|..|:.....|.|.|:.|.::|.......|.:|||....|.|
plant    27 VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQLKLACPG 91

  Fly    80 HFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPED--RQLYEKKLHNPNFSYLGKKALHV 142
            |.|:::|..|::|...|....|.||..|..|.|.|.||||  |.:.:.||.... ..:..|.|..
plant    92 HCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIKG-DIVSAKQLES 155

  Fly   143 QMLAKAK----------------------------------KVT------------KCPHCGSPN 161
            ....|:|                                  :||            .|..|...|
plant   156 NTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGIN 220

  Fly   162 GGVKK----------------GPGLLKILH-----------DPYKGRKMDSLFTSNMNEMLRST- 198
            ..::|                |..:::.|.           |.:....:|:|  |.:.:..:.| 
plant   221 PKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSSVENPDGFDDSGIDAL--SEVEDGDKETR 283

  Fly   199 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRD---VALLGMCSHDAHPK----HLIVTRVFV 256
            :.:.::.:....:::..:|.|..|.::.:.:.|.:   .:.:|........|    ...:..|.|
plant   284 EKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLV 348

  Fly   257 PPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQL 314
            ||...||.        ||..|..|:..:.:.:|.||:.:...|.       :.::|.. |..||.
plant   349 PPTKFRPP--------TTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFR-WRNLQE 404

  Fly   315 HVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQV 379
            .|.:.|.|:.:    .:..::.:.||.|.|:.|:|.||..:.||||:.:.|:||||||.:.:|.:
plant   405 SVNVLFDSKTA----TVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDI 465

  Fly   380 GVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQEL- 443
            |:|...|..|||||||.|.|:..:||.:.|||.:||||.:...:.|:.|.......|..:|::| 
plant   466 GIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLL 530

  Fly   444 -----------KC-----GDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QPQRTFRFNECA 491
                       .|     |..|.||:|||||||.||||:|||.|:|.|:.:| :.::|.|.:...
plant   531 SSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYAN 595

  Fly   492 CTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEV 556
            |:.|||||||||||:|.||.|.:||||..::...:....|.|||.|.|..||.|....|||:::.
plant   596 CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDT 660

  Fly   557 FLTKEEAMQL----------AACFLANED-------STMHIKLPPPALLKPRRLWTGKQMFSLLM 604
            ||.|:...||          .:.|.....       |...:....||:|||..||||||:.:.: 
plant   661 FLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAV- 724

  Fly   605 RPNDDSQVRLNMVNKGR----------------------------NYTRNKDLCSNDSW------ 635
                     ||.:.||.                            :.|:.|::  ::||      
plant   725 ---------LNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEI--DESWKQNLNE 778

  Fly   636 --IHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRL----ARIASYFLQNRGF 694
              :|||.:|.:|||:|||       |...|.|:....|.:.:.|...|    :|:.:.|||..||
plant   779 DKLHIRKNEFVCGVIDKA-------QFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGF 836

  Fly   695 SFGISDVTPSKKLLQHKELLLNNGYAKCNEYIE--LLKAGTLQCQPGCTPEETLESVMLRELSAI 757
            :.|:.|:...|.:.:.:...|.    :|....|  |.|...:.......|::     |...:..|
plant   837 TCGVDDLIILKDMDEERTKQLQ----ECENVGERVLRKTFGIDVDVQIDPQD-----MRSRIERI 892

  Fly   758 REQAAKTCFAELHPT----------------------------NSALIMALSGSKGSNINISQMI 794
            ..:..::..|.|..:                            |...:|.:||:|||.:|..|:.
plant   893 LYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQIS 957

  Fly   795 ACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDT 859
            :.:|||.:.|||||.....:.||.|......|.|.||:.:.|.|||.|.|::||.||||||||||
plant   958 SHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT 1022

  Fly   860 AVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYD 924
            ||||:.:|||||.|:|.||.|.|:||.|||:|...::...||.||:|             ||:..
plant  1023 AVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD-------------VHRSS 1074

  Fly   925 NLRAQHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCI 989
            .:.    :.|:..:|.:.:.:            :..:|......::|:.:..   .|:|..||.:
plant  1075 FIE----KFKELTINQDMVLQ------------KCSEDMLSGASSYISDLPI---SLKKGAEKFV 1120

  Fly   990 DLCHQIECLTT-----EQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAG 1049
            :.....|.:.:     |:||:.|:   .::..::.:||..||.:||||:|||.|||||.|||.||
plant  1121 EAMPMNERIASKFVRQEELLKLVK---SKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG 1182

  Fly  1050 VASMNITQGVPRIVEII-NATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVC 1113
            ...||:|.|:||:.||: .|...|.|||:|..|....:.|.|..:..|:.|.|:|::...:|:..
plant  1183 RGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSV 1247

  Fly  1114 GPYSCYL--------------------------------------------AIGVDMARI-KLLG 1133
            .||:.|.                                            ||...|..: ::.|
plant  1248 VPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRG 1312

  Fly  1134 LHIDL------------------------------------------------------------ 1138
            :|.|:                                                            
plant  1313 IHNDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDE 1377

  Fly  1139 --------------------DTIVF---------SILKSRMRVKPTQVEVVASQS----RIVVRV 1170
                                ||.|.         ..::.:..||  .|:.|..||    |..||.
plant  1378 TNEPSSISGVEDPEMDSENEDTEVSKEDTPEPQEESMEPQKEVK--GVKNVKEQSKKKRRKFVRA 1440

  Fly  1171 EATRTSTINAE------------------LARLA------LSLQN--------VVVAGLPNI--- 1200
            ::.|...:..|                  ||::|      :.:||        |...|.|.:   
plant  1441 KSDRHIFVKGEGEKFEVHFKFATDDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYH 1505

  Fly  1201 -----NRAVIAVDDARQPPT-------YKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGI 1253
                 .|..|:.|:.:..|.       :....|.....||...|        ||:|.::....|:
plant  1506 GDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLDVRYLY--------SNSIHDMLNIFGV 1562

  Fly  1254 EAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTA 1318
            ||||..|:.||..|.:.:|:||..||:.|:|..||..|....::|.|......|.|...:||...
plant  1563 EAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETAT 1627

  Fly  1319 DHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHE 1360
            ..:..||.||:.|.:...|.||.||:||..|||.|.|:|:.|
plant  1628 KFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC160NP_001096987.2 PRK08566 13..919 CDD:236292 311/1098 (28%)
RNAP_III_RPC1_N 24..889 CDD:259847 301/1059 (28%)
RNA_pol_Rpb1_5 839..1304 CDD:282807 163/655 (25%)
RNAP_III_Rpc1_C 1013..1353 CDD:132723 125/525 (24%)
NRPA1NP_191325.1 PRK14977 23..1668 CDD:184940 454/1729 (26%)
RNAP_I_RPA1_N 31..1048 CDD:259844 299/1060 (28%)
RNAP_I_Rpa1_C 1146..1665 CDD:132722 126/528 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D591636at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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