Sequence 1: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005156282.1 | Gene: | polr2a / 553347 | ZFINID: | ZDB-GENE-041008-78 | Length: | 1965 | Species: | Danio rerio |
Alignment Length: | 1552 | Identity: | 512/1552 - (32%) |
---|---|---|---|
Similarity: | 762/1552 - (49%) | Gaps: | 272/1552 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 ISHVQFGISGADEIQQEALVR--IISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQGLNEC 77
Fly 78 IGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVML---KPEDRQLYEKKLHNPNFSYLGKKA 139
Fly 140 LHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDL 204
Fly 205 NSTLG-------------------------NYSTAEE---LTPLMVLDLFEQIPQRDVALLGMCS 241
Fly 242 HDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIH 306
Fly 307 EDWDFLQLHVALYFHSEISGIPINMAPK-KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISP 370
Fly 371 DPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGN 435
Fly 436 REKV---------AQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECA 491
Fly 492 CTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEV 556
Fly 557 FLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGR 621
Fly 622 N----YTRNKDLCSNDSWIHIRNSELMCGVMDKATMG--SGTKQCIFYLLLRDFGESHATKAMWR 680
Fly 681 LARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEET 745
Fly 746 LESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNG 810
Fly 811 FENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVK 875
Fly 876 CLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRN----KPVDLVHQ------YDNLRA-- 928
Fly 929 ---QHPQGKDRPLNAEEMSEALETLLRTPEFAEARDD---------------------------- 962
Fly 963 ---FKLDVR-----------NHINTVSKRI------GQLQKRYEKCIDLCHQIE-----C----- 997
Fly 998 ----LTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQG 1058
Fly 1059 VPRIVEIINATKTISTPIITAEL--ENCHSMEFARQVKARIEKTTLAELSSYVEVVCGP------ 1115
Fly 1116 ----------YSCYLAIGVDMARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEVVASQ------- 1163
Fly 1164 -----------SRIVVRVEATRT-------------------------STINAELARLALSLQNV 1192
Fly 1193 VVAGLPNIN--RAVIAVDDARQPPTYKLCIE--GYGLRDVIATYGVVGKRTRSNNICEIYQTLGI 1253
Fly 1254 EAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTA 1318
Fly 1319 DHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHE----DKQVPPIEPTI 1371 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 355/956 (37%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 336/913 (37%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 181/606 (30%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 121/404 (30%) | ||
polr2a | XP_005156282.1 | PRK08566 | 16..892 | CDD:236292 | 348/937 (37%) |
RNAP_II_RPB1_N | 17..873 | CDD:259848 | 337/917 (37%) | ||
RNA_pol_Rpb1_5 | 827..1425 | CDD:282807 | 181/612 (30%) | ||
RNA_pol_Rpb1_6 | 893..1076 | CDD:282801 | 35/188 (19%) | ||
RNAP_II_Rpb1_C | 1055..1473 | CDD:132720 | 128/426 (30%) | ||
Aft1_HRA | 1494..1571 | CDD:288619 | |||
CTD | 1506..1611 | CDD:215026 | |||
RCR | <1869..1948 | CDD:304939 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100210 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |