DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpIIIC160 and RpI1

DIOPT Version :9

Sequence 1:NP_001096987.2 Gene:RpIIIC160 / 32524 FlyBaseID:FBgn0030687 Length:1383 Species:Drosophila melanogaster
Sequence 2:NP_523743.1 Gene:RpI1 / 36617 FlyBaseID:FBgn0019938 Length:1642 Species:Drosophila melanogaster


Alignment Length:1709 Identity:458/1709 - (26%)
Similarity:732/1709 - (42%) Gaps:434/1709 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAM--CET 69
            ||..::...|.::|.:....||::.::|::|:...:.|....:|.|:.|.||| |....|  |.|
  Fly     5 RAMDVHMFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMG-SYGRCMDPCGT 68

  Fly    70 CGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSY 134
            |.: |.:|.||.|:::|..||::....:....:|.:.|..|..:.:|..:.::...:|...:..|
  Fly    69 CLK-LQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGY 132

  Fly   135 --------LGKKAL-------------------HV----QMLAKAKK---------------VT- 152
                    |.|..:                   |:    ::|.|.:|               :| 
  Fly   133 IIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAITH 197

  Fly   153 --------KCPHCGSPNGGVKKGPGLLKILH---------DPYKGRKMDSLFTSNMNEMLRSTQT 200
                    ||.||       .|....::.:|         ...|.|......|...|:::.:.:.
  Fly   198 SALQRLGKKCRHC-------NKSMRFVRYMHRRLVFYVTLADIKERVGTGAETGGQNKVIFADEC 255

  Fly   201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIV--TRVFVPPACIRP 263
            .|.|.....||   .||..|:|       |...::...:...|..|..|..  |....||.....
  Fly   256 RRYLRQIYANY---PELLKLLV-------PVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPL 310

  Fly   264 SVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG--------------KIELIHED----WD 310
            :::.::..|..:.|:.:...|...:.:|:.::|..|.              |.|..||.    |.
  Fly   311 NMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEKLYTAWL 375

  Fly   311 FLQLHVALYFHSEISGIPINMAPK-KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNL 374
            .||:.|.:.       :.:||:.: |:..|:.|.::.|.|..|.::.||||:::.||||:||||:
  Fly   376 ALQMSVDVL-------LDVNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNI 433

  Fly   375 MINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGN---R 436
            .::::|:|...||.|:||..|...|:..:|::|.|||.:||||||:|.: :.|..|:...|   |
  Fly   434 NVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDK-NGFTTYIPADNASKR 497

  Fly   437 EKVAQEL----KCG-DVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QPQRTFRFNECACTPY 495
            |.:|:.|    |.| .:|.||:.:||::|.||||||||.|||.|:|:: ..::|||.:...|..|
  Fly   498 ESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAY 562

  Fly   496 NADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTK 560
            ||||||||||.|.||:|.|||||..|:...||.:.||:|..|....||.:..|..|:.:..|..:
  Fly   563 NADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNR 627

  Fly   561 EEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLM---------RPNDDSQVRLNM 616
            |:..||.  |.........|||.||.:|||..||:|||:.|.::         |.|.||..::  
  Fly   628 EDYQQLV--FQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKI-- 688

  Fly   617 VNKGRNYTRNK-DLCS--------NDSWIHIRNSELMCGVMDKATMGS---GTKQCIFYLLLRDF 669
            ..|..|.:|.: .:|.        ::|.:.|||.||:.||:||...|:   |...|::.|    :
  Fly   689 AGKNWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYEL----Y 749

  Fly   670 GESHATKAMWRLARIASYFLQNRGFSFGISDVTPS-------KKLLQ------------------ 709
            |...:|..:....::.::|||..||:.|:.|:..:       :|:::                  
  Fly   750 GGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELED 814

  Fly   710 ---HKELL--LNNGYAKCN--------EYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQA 761
               |.||:  :...|.|.:        :|..||...|......|.|...:               
  Fly   815 EPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLI--------------- 864

  Fly   762 AKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
              |.|    |:|:..:|.|||:|||.:|..|:...:||..:.|||.|.....::||.|......|
  Fly   865 --TKF----PSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923

  Fly   827 AARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNA 891
            .:.||:...|.:|:.|.:||||.|||||||:||||||:.:|||||.|:|.||.|.||||.|||::
  Fly   924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDS 988

  Fly   892 VNEMVDTIYGGDGLDPVSME-----------TRN-----KPVDLVHQYDNLRAQHPQGKDRPLNA 940
            .|.:|..:||.||||.:..:           |:|     :|..|....|..:....|..::.:.:
  Fly   989 DNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRS 1053

  Fly   941 EEMSEALETLLRTPEFA-EARDDFKLDVRNHIN--TVSKRIGQ----------------LQKRYE 986
            .|..:..:.......|: |.|::.::...|.||  |..:|..:                .:|:|.
  Fly  1054 WEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYA 1118

  Fly   987 KCID--------------LCHQIECLTTE---------QLLQFVRRINDRYNRAVTEPGTAVGAI 1028
            :|.|              :..:...|.|:         :.:..:.|:  :..:::..||..||.|
  Fly  1119 RCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALKETIADIMRV--KTIKSLAAPGEPVGLI 1181

  Fly  1029 AAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAELENCHSMEFARQ 1092
            ||||||||.|||||.||||||...||:|.|:||:.||:. |:..|.||.:...::.....: |.:
  Fly  1182 AAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQQHQ-AEK 1245

  Fly  1093 VKARIEKTTLAELSSYVEVVCG----PYSCYLAIGVDMARIKLL---------GL---HI----- 1136
            ::..:...|||.|..||.|..|    |...|   ..|| |.:.|         |:   ||     
  Fly  1246 LRINLNSVTLANLLEYVHVSTGLTLDPERSY---EYDM-RFQFLPREVYKEDYGVRPKHIIKYMH 1306

  Fly  1137 --DLDTIVFSILKSRMRVKPTQVEVVASQS----------------------------------- 1164
              ....::.:|||.....:.|::.|:..:.                                   
  Fly  1307 QTFFKQLIRAILKVSNASRTTKIVVIDDKKDADKEDDNDLDNGDEVGRSKAKANDDDSSDDNDDD 1371

  Fly  1165 ----------------------------------------------------------------- 1164
                                                                             
  Fly  1372 DATGVKLKQRKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGDDKAVERLLSND 1436

  Fly  1165 -------------------RIVVRVEATRTSTINAELARLALSLQNVVVAGLPNINRAVI--AVD 1208
                               .:.||.:....::|..|||..:      ||..:.:|.||:|  ..|
  Fly  1437 MVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKS------VVHQVQHIKRAIIYKGTD 1495

  Fly  1209 DARQPPTYKLCIEGYGLRDVIATYGVVG-KRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHG 1272
            |.:...|     :|..:.::.....::. .|..||:|..|.:|.|||||..:|:.|::.|.:.:|
  Fly  1496 DDQLLKT-----DGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYG 1555

  Fly  1273 MSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVS 1337
            ::||.||:.|:|..||..|....::|.|: :...|.....|||.:...|..||.:|:.|.::..|
  Fly  1556 ITVDRRHLSLIADYMTFDGTFQPLSRKGM-EHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPS 1619

  Fly  1338 ERIILGMPACIGTGIFKLL 1356
            .|:::|:|...|||.|:||
  Fly  1620 SRLMVGLPVRNGTGAFELL 1638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC160NP_001096987.2 PRK08566 13..919 CDD:236292 317/1076 (29%)
RNAP_III_RPC1_N 24..889 CDD:259847 302/1019 (30%)
RNA_pol_Rpb1_5 839..1304 CDD:282807 167/668 (25%)
RNAP_III_Rpc1_C 1013..1353 CDD:132723 117/485 (24%)
RpI1NP_523743.1 RNA_pol_rpoA1 14..1009 CDD:274106 314/1050 (30%)
RNAP_I_RPA1_N 18..982 CDD:259844 300/1019 (29%)
RNA_pol_Rpb1_5 936..1593 CDD:282807 168/675 (25%)
HMG-box 1057..1119 CDD:294061 10/61 (16%)
RNAP_I_Rpa1_C 1166..1638 CDD:132722 118/488 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466353
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0086
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 293 1.000 Inparanoid score I87
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D11825at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm51395
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19376
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.900

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