Sequence 1: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_056240.2 | Gene: | POLR1A / 25885 | HGNCID: | 17264 | Length: | 1720 | Species: | Homo sapiens |
Alignment Length: | 1785 | Identity: | 447/1785 - (25%) |
---|---|---|---|
Similarity: | 712/1785 - (39%) | Gaps: | 517/1785 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 KKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQGLNEC 77
Fly 78 IGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKP------------------------- 117
Fly 118 --------------------EDRQLYEKKLHNPNFSYLGKKALHVQMLAKAK------------K 150
Fly 151 VTKCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAE 215
Fly 216 E--------LTPLMVLDLFEQIPQRDVALL----------GMCSHDAHPKHLIVTRVFVPPACIR 262
Fly 263 P--------------------------------------SVLSEVKAGTTEDDLTMKQSEILLIN 289
Fly 290 DVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCN 354
Fly 355 LSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANY 419
Fly 420 VQQRGSSFKKYLAYG--NREKVAQEL----------KCGDVVERHLRDGDIVLFNRQPSLHKMSI 472
Fly 473 MCHRAKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEI 536
Fly 537 LIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 601
Fly 602 -LLMRPNDDSQVRLNMVNK----GRNYTR---------NKD-LCSNDSWIHIRNSELMCGVMDKA 651
Fly 652 TMGS---GTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQ-NRGFSFGISDVTPSKKLLQHKE 712
Fly 713 LLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIRE------------------ 759
Fly 760 ---------------QAAKTCFA-ELH---PTNSALIMALSGSKGSNINISQMIACVGQQAISGK 805
Fly 806 RVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQ 870
Fly 871 RRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLD-------------------PVSME----- 911
Fly 912 ---TRNKPVDLVHQYDNLR---AQHPQGKDRP----LNAEEMSEALETLL--------RTP---- 954
Fly 955 -----------------------------------EFAEARDDFKLDVRNHINTVSKRIGQLQKR 984
Fly 985 YEKCIDLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAG 1049
Fly 1050 VASMNITQGVPRIVEIIN-ATKTISTPIITAELENC-HSMEFARQVKARIEKTTLAELSSYVEV- 1111
Fly 1112 --VCG-----------------PYSCY----------LAIGVDMARIKLL--------------- 1132
Fly 1133 ----------------------------------------------------------------- 1132
Fly 1133 ------------------------------------GLHIDLDTIVFSILKSRMRVKPTQVEVVA 1161
Fly 1162 SQSRIVVRVEATR--------------------------TSTINAELARLALSL-QNVVVAGLPN 1199
Fly 1200 INRAVI-AVDDARQPPTYKLCIEGYGLRDVIATYGVVG-KRTRSNNICEIYQTLGIEAARTIIMS 1262
Fly 1263 EITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYY 1327
Fly 1328 GQTDAINGVSERIILGMPACIGTGIFKLLQ 1357 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 312/1114 (28%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 297/1046 (28%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 168/722 (23%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 111/516 (22%) | ||
POLR1A | NP_056240.2 | PRK08566 | 4..1025 | CDD:236292 | 306/1074 (28%) |
RNAP_I_RPA1_N | 16..1004 | CDD:259844 | 296/1047 (28%) | ||
RNA_pol_Rpb1_5 | 958..1671 | CDD:282807 | 169/729 (23%) | ||
Bridging helix. /evidence=ECO:0000250 | 961..973 | 9/11 (82%) | |||
RNAP_I_Rpa1_C | 1199..1716 | CDD:132722 | 112/519 (22%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1365..1498 | 7/134 (5%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.820 |