Sequence 1: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_500523.4 | Gene: | ama-1 / 177190 | WormBaseID: | WBGene00000123 | Length: | 1856 | Species: | Caenorhabditis elegans |
Alignment Length: | 1523 | Identity: | 515/1523 - (33%) |
---|---|---|---|
Similarity: | 765/1523 - (50%) | Gaps: | 252/1523 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 ISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQGLNECIG 79
Fly 80 HFGYLDLALPVFHIGHFRSTINILQMICKVCAHVML-KPEDRQLYEKKLHNPNFSYLGKKALHVQ 143
Fly 144 MLAKAKKVTKCPHCGSPNGGVKKGPGLLKILHDPYK-GRK------------------MDSLFTS 189
Fly 190 NMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRV 254
Fly 255 FVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALY 319
Fly 320 FHSEISGIPINMAPKKTTR---GIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGV 381
Fly 382 PVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANY-VQQRGSSFKKYLAYGNREKVAQELKC 445
Fly 446 GDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQ 510
Fly 511 TEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANED 575
Fly 576 STMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCSNDS----WI 636
Fly 637 H-------IRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGF 694
Fly 695 SFGISDVTPSKKLLQHKELLLNNGYAKCN----EYIELLKAGTLQCQPGCTPEETLESVMLRELS 755
Fly 756 AIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFE 820
Fly 821 RHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYD 885
Fly 886 GTVRNAVNEMVDTIYGGDGLDPVSMETRNKP--------------VDLVHQYDNLRAQHPQGKDR 936
Fly 937 PLNAEEMSEALETLLRTPEFAEARDD-------------------------------FKLDVRNH 970
Fly 971 INT----VSKRIGQLQKR---------------YEKCI--------DLCHQIEC----LTTEQLL 1004
Fly 1005 QFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINAT 1069
Fly 1070 KTISTPIITAELENCHSM--EFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGV-------- 1124
Fly 1125 ------DMARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEVVASQ------------------SR 1165
Fly 1166 IVVRVEATRTSTINAELARL-------------ALSLQNVVVAGLPNINRAVIAVDDARQPPT-- 1215
Fly 1216 -----------------YKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSE 1263
Fly 1264 ITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYG 1328
Fly 1329 QTDAINGVSERIILGMPACIGTGIFKLL 1356 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 361/956 (38%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 341/903 (38%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 183/606 (30%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 128/405 (32%) | ||
ama-1 | NP_500523.4 | PRK08566 | 7..893 | CDD:236292 | 358/931 (38%) |
RNAP_II_RPB1_N | 17..870 | CDD:259848 | 342/906 (38%) | ||
RNA_pol_Rpb1_5 | 824..1420 | CDD:282807 | 183/612 (30%) | ||
RNA_pol_Rpb1_6 | 890..1073 | CDD:282801 | 30/187 (16%) | ||
RNAP_II_Rpb1_C | 1053..1468 | CDD:132720 | 133/426 (31%) | ||
CTD | 1493..1584 | CDD:215026 | |||
CytochromB561_N | <1735..>1828 | CDD:286826 | |||
DUF3432 | 1746..1837 | CDD:288743 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100210 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.720 |