Sequence 1: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031751156.1 | Gene: | polr1a / 100158635 | XenbaseID: | XB-GENE-1005160 | Length: | 1784 | Species: | Xenopus tropicalis |
Alignment Length: | 1773 | Identity: | 460/1773 - (25%) |
---|---|---|---|
Similarity: | 729/1773 - (41%) | Gaps: | 480/1773 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 RASALNK-----KISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAM 66
Fly 67 CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVC---------AHVM---LKPED 119
Fly 120 R----QLYE-----KKLHNPNFSYLGKKAL-----HV-QMLAKAKK-----------VT------ 152
Fly 153 ----------KCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNST 207
Fly 208 LGNYSTAE---------------ELTPLMVLDLFEQIPQRDVALL-----GMCSHDAH---PKHL 249
Fly 250 IVTRVFVPPACIRP------------------SVLSEVK----------------AGTTEDDLTM 280
Fly 281 KQSEILLINDVIQRHMAT--GGKI-ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQ 342
Fly 343 RLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELV 407
Fly 408 RNGPSMHPGANYVQQRGSSFKKYLAYGN---REKVAQEL---------KCGDVVERHLRDGDIVL 460
Fly 461 FNRQPSLHKMSIMCHRAKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGN 524
Fly 525 QSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLK 589
Fly 590 PRRLWTGKQMFS-LLMRPNDDSQVRLNMVNK----GRNYTRNK----------DLCSNDSWIHIR 639
Fly 640 NSELMCGVMDKATMGS---GTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQ-NRGFSFGISD 700
Fly 701 VT----PSKKLLQHKELLLNNGYAKCNEYIELLKA-------GTLQCQPGCTPEETLESVMLR-- 752
Fly 753 -ELSAIREQAAKTCFA-ELH---PTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFE 812
Fly 813 NRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCL 877
Fly 878 EDLVVHYDGTVRNAVNEMVDTIYGGDGLD------------PVSMET-----RNKPVDLV----- 920
Fly 921 --------HQYDNLRAQHPQGKDR-------------------PLNAEEMSEAL----------- 947
Fly 948 ------------ETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRY----EKCIDLCHQIE 996
Fly 997 CLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1061
Fly 1062 IVEIIN-ATKTISTPIITAELENC-HSMEFARQVKARIEKTTLAEL--------SSYVEVVCGPY 1116
Fly 1117 SCYLAIGVDMARI-------------KLL---GLHIDLDTIVFSIL------------------- 1146
Fly 1147 -----------------------------------------------KSRMRVKPTQVEVVASQS 1164
Fly 1165 R----------------------------IVVRVEATRTSTINAE-----LAR------------ 1184
Fly 1185 --------------------LALSLQ-----------------NVVVAGLPNINRAVIAVDDARQ 1212
Fly 1213 PPTYKLCI--EGYGLRDVIATYGVVG-KRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMS 1274
Fly 1275 VDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSER 1339
Fly 1340 IILGMPACIGTGIFKLLQ 1357 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 318/1091 (29%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 303/1028 (29%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 169/717 (24%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 114/516 (22%) | ||
polr1a | XP_031751156.1 | RNAP_I_RPA1_N | 84..1075 | CDD:259844 | 302/1029 (29%) |
rpoC2_cyan | 961..>1306 | CDD:274104 | 117/353 (33%) | ||
RNAP_I_Rpa1_C | 1270..1780 | CDD:132722 | 115/519 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.010 |