DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Graf and ophn1

DIOPT Version :9

Sequence 1:NP_001285296.1 Gene:Graf / 32522 FlyBaseID:FBgn0030685 Length:1025 Species:Drosophila melanogaster
Sequence 2:NP_001072480.1 Gene:ophn1 / 779935 XenbaseID:XB-GENE-1009725 Length:792 Species:Xenopus tropicalis


Alignment Length:854 Identity:295/854 - (34%)
Similarity:439/854 - (51%) Gaps:103/854 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GLEPLEFEECIVDSPDFRENLNRHEKELDHTSHQIKRIIKEVKDLMSAAKILSTRMKQLAILLND 74
            |..||||.:|.:|||.|||:|..:|:||:.|:..||.:||:...|:||.|..|:.:::.:..|..
 Frog     2 GHSPLEFSDCYLDSPIFRESLKGYEQELERTNKFIKDVIKDGNALISAIKGYSSAVQKFSQTLQS 66

  Fly    75 FNFECIGTAQTDDENVICESLKRFGAIIGNIEDEREKMLTLADKHIIESLEDFRKKQIGGVKENK 139
            :.|:.||...||||..|.||.|.|..::..:|:||..||..||..:|:.||.|||.|||..||.|
 Frog    67 YQFDFIGDTMTDDEINIAESFKEFADLLQEVENERMMMLQNADDLLIKPLESFRKDQIGLTKERK 131

  Fly   140 KKFDKKTEKFCQSQERFLNMSTKKPENTIQEADASLGMHEREYIQESLSYVLRIQEVQERIKFEF 204
            |||||..||:....:|.:|:|:||.|..:.|||..:...::.:.:.||.||.:||||||..||..
 Frog   132 KKFDKDGEKYYSLLDRHVNLSSKKKEVQLNEADQQVDREKQNFYESSLEYVYQIQEVQESKKFCI 196

  Fly   205 VEILLAFISGWLVFYHTAHEQAEDHRDYLQDLRHKVQKTRENFEEAREKVTELKTKYME--KRTK 267
            ||.:|.|:.......:...|..:|...|.|.|:..:|.||.:|...||::.:||.:..|  ...|
 Frog   197 VEPVLTFLHCLFTSNNLTFELTQDFLPYKQQLQLSLQNTRNHFSSTREELEDLKKRMTEAPMMCK 261

  Fly   268 PEEIFTKRGYLFLMEKSSILKISLLEPFKATWTKYYCTFKKQKREFTMLQFNQMNHNFTRPEARD 332
            .....|..|||:..||.::         ..||.|:||.::|:.:..:|:...|      :|.:|.
 Frog   262 LRGQSTIEGYLYSQEKRAL---------GITWVKHYCKYEKEGKVLSMMPLEQ------KPGSRQ 311

  Fly   333 -DEKLTLFSCQRRASE-FEKRFCFDLTFKEKPGVVYTFQALSEKDHRYWISAMDGTEPTYLAPGK 395
             :::|||.||.||.|: .:||||||:...|:||.: |.|||||.:.|.||.||||.||.|.:|  
 Frog   312 GNQELTLKSCIRRKSDSIDKRFCFDVETNERPGTL-TLQALSETNRRLWIEAMDGKEPIYHSP-- 373

  Fly   396 IKVSEAYHLDEAGFMFIRRCIQVLEIRGLEDEGIYRKSGVGTKISKLLALGLNQKESDDVFVDDK 460
            |...:...|:|.||.|:|:||..:|..|:..||:||..|...::.|||          :.|.|.|
 Frog   374 ITKRDEMELNEVGFRFVRKCINAVEATGITSEGVYRTVGSNIQVQKLL----------NAFFDPK 428

  Fly   461 YR---DLMES----NTIASALKMYLRNLNEPLMTYQYHSDFIEAAKQETLNQRVNEVHKLVYKLP 518
            ..   ||..|    .||.|:||.|||||:||:|||:.|.|.:.|:|.|.|:.|:..:|.|||:||
 Frog   429 CPGNVDLQNSEWDIKTITSSLKFYLRNLSEPVMTYKLHRDLVLASKSENLDYRLGAIHCLVYRLP 493

  Fly   519 QPNFQMLDMVICHLTDVSRKYEKNKMSVFNLGVVFGPTLLRPREESVAAILDIKFNNIVINILID 583
            :.:.:||:::|.||:.|.....:|.||..|:||:|||||:|.:|::|||:::|||.|||:.:||:
 Frog   494 ENHREMLELIIRHLSRVCEFSRENLMSPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVELLIE 558

  Fly   584 NYERIFKNKPSADIKLPDATKAPSIMYPSRSSPPTRMP-----------RASQIGKAASTGAM-- 635
            |.::||..      .|.|....|  :.|.|.:|.|.:|           ...|:|::.....:  
 Frog   559 NCKKIFSG------PLDDNCGPP--VPPPRITPRTHIPITISKRQARGRSGLQLGQSEEEDELPG 615

  Fly   636 ----GSSSNTAGNPMFLNQQKIYRVVSKTNCTEPTMSSSLQNIPNGDNYALGSNAMNSSGGAQCI 696
                ||.:|....|:.|.::|:...:.:.:  .|:.|.|..::   |...:.|...:.||.|.  
 Frog   616 HALNGSVTNNHEYPLPLQRKKLLPNLQRVD--TPSQSDSSSDV---DVAKMVSRIQDGSGKAN-- 673

  Fly   697 SLSPPMHMLNGILSPTIGSINNLHTISKNETSTRRYVP-DTEIAPDYGIIGANNGGVTLQSHHAV 760
                 ...|||.| |...:......:......||..|| :.|        |.|...|  :|....
 Frog   674 -----TKQLNGDL-PVYSTATKPSALHPKRGPTRPAVPREAE--------GDNVNKV--RSPGER 722

  Fly   761 PVSSTSNFRHPEYLMTTANPVTQSGSSSHIYTNTSSAGANSSNRISLSNVSPPNTAMRKERFLGS 825
            ||.|....|.|:      .|...:.......|:.||.         :...:|.:....:.:|..:
 Frog   723 PVISRPPTRPPD------PPCRVALQKQEPRTDNSSL---------VKEDTPSSVVASRTKFFEN 772

  Fly   826 ASGPQQHPP 834
            ||.|:..||
 Frog   773 ASRPRVSPP 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrafNP_001285296.1 BAR_RhoGAP_OPHN1-like 27..233 CDD:153286 82/205 (40%)
BAR-PH_GRAF_family 273..390 CDD:269953 48/118 (41%)
PH 279..383 CDD:278594 38/105 (36%)
RhoGAP 383..584 CDD:295372 90/207 (43%)
SH3_GRAF-like 967..1020 CDD:212815
ophn1NP_001072480.1 BAR_OPHN1 19..225 CDD:153317 82/205 (40%)
BAR-PH_GRAF_family 267..370 CDD:269953 48/118 (41%)
RhoGAP 363..559 CDD:383032 90/207 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 230 1.000 Domainoid score I2398
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 550 1.000 Inparanoid score I1117
OMA 1 1.010 - - QHG45894
OrthoDB 1 1.010 - - D306399at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm49266
Panther 1 1.100 - - O PTHR12552
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X614
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.080

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