DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Graf and abr

DIOPT Version :9

Sequence 1:NP_001285296.1 Gene:Graf / 32522 FlyBaseID:FBgn0030685 Length:1025 Species:Drosophila melanogaster
Sequence 2:XP_012812699.1 Gene:abr / 779766 XenbaseID:XB-GENE-5797083 Length:1019 Species:Xenopus tropicalis


Alignment Length:809 Identity:170/809 - (21%)
Similarity:281/809 - (34%) Gaps:285/809 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KNVRRGLEPLEFEECIVDSPDFRENLN-RHEKELDHTSHQIKRII------KEVKDLMSAAKILS 62
            |:.|.|.|.:.:   |.:||.....|: |.:..:|..|.....::      :..|.|:....:||
 Frog   195 KSSREGSETMPY---IDESPTMSPQLSARSQDSVDGVSPTPTEVLLPGGESESDKGLLMRKLVLS 256

  Fly    63 TRMKQLAILLNDFNFECI------GTAQTDDENVICESLKRFGAIIGNIEDEREKMLTLADK--- 118
            ..:....|.:|......:      .||.|....:   :|::...|...|||..:......||   
 Frog   257 GVLASEEIYINQLEALLLPMKPLKATASTSQPVL---TLQQINDIFYKIEDIYQMHKDFYDKLCP 318

  Fly   119 ------------HIIESLEDFRKKQIGGVK---ENKKKFDKKTEKFCQSQERFLNM--------- 159
                        |:.:.|    ..|:|..|   :|.|...:..||..|...:|..:         
 Frog   319 IVLQFDNKTTVGHLFQKL----ASQLGVYKAFVDNYKFALETAEKCSQCNVQFFKISEDLKVKGP 379

  Fly   160 --STKKPENTIQEA----------DASLGMHE---------REY--IQESL-------------- 187
              |.::|::...||          .::|.:|:         .:|  :|::|              
 Frog   380 KDSKEQPQSVTMEALLYKPIDRVTRSTLVLHDLLKHTPTDHPDYPLLQDALRISQNFLSSINEDI 444

  Fly   188 --------------------SYVLRIQEVQERIK--FEFVEILLA-------------FISGW-- 215
                                .:::.:.|...:::  |.|.::||.             :...|  
 Frog   445 DPRRTAVTTPKGEPRQLVKDGFLVELSENSRKLRHLFLFTDLLLCAKLKKTTVGKHQQYDCKWYI 509

  Fly   216 ----LVF------------YHTAHEQAEDHRDYLQDLRHKVQKTRENFEEAREKVTELKTKYME- 263
                |||            :.|...:.|:.:..:..|:.::||.|::.:.:...:..||.|..| 
 Frog   510 PLADLVFPSPEESEPIPQLHATPDHEIEEMKAKISVLKSEIQKERKSNKGSSRTIERLKKKMFEY 574

  Fly   264 -------KRTKPEEIFTKRG--YLFLME--------KSSILKIS-------LLEPFK-------- 296
                   ..|.|..|..|.|  |.||:.        :.:|.|:.       .|.||:        
 Frog   575 ESWLLLYSPTIPFRIHNKNGKSYFFLLSSDYERSEWREAIQKLQKKDLQALALSPFELQVLTASC 639

  Fly   297 -------------------------------------ATWTKYYCTF----------KKQKREFT 314
                                                 :..:..|||.          |.:.|.| 
 Frog   640 FKLRTVHNVPIISHKDDDESPGLYGFLHVIVKSAKGFSHSSNLYCTLEVDSFGYFVSKAKTRVF- 703

  Fly   315 MLQFNQMNHNFTRPEARDDEKLTLFSCQ-RRASEFEKRFCFDLTFKEKPG------------VVY 366
                    .:.|.||..::.::.|...| .|...:||  |:|.:...|..            :..
 Frog   704 --------RDTTEPEWNEEFEIELEGSQCLRILCYEK--CYDKSKLNKDNNEIVDKIMGKGQIQL 758

  Fly   367 TFQALSEKDHRYWISAMDGTEPTY------------LAPGK-------IKVSEAYHLDEAGFMFI 412
            ..|.:..|:....:..|:|.:..:            ..|.|       :|:|.....:.:...:|
 Frog   759 DPQVVQSKNWHDDVIEMNGIKVEFSMKFSSRDMSLKRTPSKKQTGVFGVKISVVTKRERSKVPYI 823

  Fly   413 -RRCIQVLEIRGLEDEGIYRKSGVGTKISKLLA-LGLNQKESDDVFVDDKYRDLMESNTIASALK 475
             |:||:.:|.||:|:.||||.|||.|.|..|.| ...|.|:...:..|      |:.|.||..||
 Frog   824 VRQCIEEVEKRGIEEVGIYRISGVATDIQALKASFDANSKDILMMLSD------MDINAIAGTLK 882

  Fly   476 MYLRNLNEPLMTYQYHSDFIE-------AAKQETLNQRVNEVHKLVYKLPQPNFQMLDMVICHLT 533
            :|.|.|.|||:|.:.:..|:|       |||:..:      :| |:..||.||......::.||.
 Frog   883 LYFRELPEPLLTDRLYLAFMEGIALSDPAAKENCM------MH-LLRSLPDPNLMTFLFLLQHLK 940

  Fly   534 DVSRKYEKNKMSVFNLGVVFGPTLLRPRE 562
            .|:.|...||||:.||..|||||||||.|
 Frog   941 RVAEKEPINKMSLHNLATVFGPTLLRPSE 969

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrafNP_001285296.1 BAR_RhoGAP_OPHN1-like 27..233 CDD:153286 51/335 (15%)
BAR-PH_GRAF_family 273..390 CDD:269953 31/201 (15%)
PH 279..383 CDD:278594 26/186 (14%)
RhoGAP 383..584 CDD:295372 72/208 (35%)
SH3_GRAF-like 967..1020 CDD:212815
abrXP_012812699.1 Bcr-Abl_Oligo 3..65 CDD:312543
RhoGEF 254..442 CDD:214619 34/194 (18%)
PH_ABR 436..620 CDD:270172 29/183 (16%)
C2_ABR 666..786 CDD:176068 21/130 (16%)
RhoGAP_Bcr 805..1000 CDD:239852 68/178 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1094
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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