DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Graf and Arhgap42

DIOPT Version :9

Sequence 1:NP_001285296.1 Gene:Graf / 32522 FlyBaseID:FBgn0030685 Length:1025 Species:Drosophila melanogaster
Sequence 2:NP_001359492.1 Gene:Arhgap42 / 71544 MGIID:1918794 Length:875 Species:Mus musculus


Alignment Length:1022 Identity:366/1022 - (35%)
Similarity:520/1022 - (50%) Gaps:158/1022 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GLEPLEFEECIVDSPDFRENLNRHEKELDHTSHQIKRIIKEVKDLMSAAKILSTRMKQLAILLND 74
            ||..|||.:..:|||||||.|..||.||:.|:..||.::|:...|:.|.:.||..:::.:..|.|
Mouse     2 GLPTLEFSDSYLDSPDFRERLQCHEIELERTNKFIKELLKDGSLLIGALRNLSMAVQKFSQSLQD 66

  Fly    75 FNFECIGTAQTDDENVICESLKRFGAIIGNIEDEREKMLTLADKHIIESLEDFRKKQIGGVKENK 139
            |.|||||.|:||||..|.:|||.|..::..:|:||.:::..|:..:|..||.|||:|||..|:.|
Mouse    67 FQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGK 131

  Fly   140 KKFDKKTEKFCQSQERFLNMSTKKPENTIQEADASLGMHEREYIQESLSYVLRIQEVQERIKFEF 204
            |||||::||:....::.||:|.||.|:.:||||:.:|...:.:.:.||.||.:||||||:.||||
Mouse   132 KKFDKESEKYYSILDKHLNLSAKKKESHLQEADSQIGREHQNFYEASLEYVFKIQEVQEKKKFEF 196

  Fly   205 VEILLAFISGWLVFYHTAHEQAEDHRDYLQDLRHKVQKTRENFEEAREKVTEL--KTKYMEKRTK 267
            ||.||:|:.|...|||..:|.|::...|.|.|:..:|.||.|||..|::|..|  :.|...:..:
Mouse   197 VEPLLSFLQGLFTFYHEGYELAQEFAPYKQQLQFNLQNTRNNFESTRQEVERLMQRMKSANQDYR 261

  Fly   268 PEEIFTKRGYLFLMEKSSILKISLLEPFKATWTKYYCTFKKQKREFTM-----LQFNQMNHNFTR 327
            |...:|..|||::.||         .|...||||:|||:.|..:.|||     ....:||...| 
Mouse   262 PPSQWTMEGYLYVQEK---------RPLGFTWTKHYCTYDKGSKMFTMSVSDVKASGKMNGLVT- 316

  Fly   328 PEARDDEKLTLFSCQRRASE-FEKRFCFDLTFKEKPGVVYTFQALSEKDHRYWISAMDGTEPTYL 391
               ...|...|.||.||.:: .:||||||:...|:.|:: |.||.||.:.:.|:.||||.||.|.
Mouse   317 ---GSPEMFKLKSCIRRKTDSIDKRFCFDIEVVERHGII-TLQAFSEANRKLWLEAMDGKEPIYT 377

  Fly   392 APGKIKVSEAYHLDEAGFMFIRRCIQVLEIRGLEDEGIYRKSGVGTKISKLLALGLNQKESDDVF 456
            .|..|...|..:|:||||.|:|:|||.:|:||:...|:||..||.:|:.||:....:.|...|:.
Mouse   378 LPAIISKKEEMYLNEAGFNFVRKCIQAVEMRGITILGLYRIGGVNSKVQKLMNTTFSPKSPPDMD 442

  Fly   457 VDDKYRDLMESNTIASALKMYLRNLNEPLMTYQYHSDFIEAAKQETLNQRVNEVHKLVYKLPQPN 521
            :|   .:|.::.||.|.||.|||.|.||||||:.|.|||.|.|.:..|.||..||.||:|||:.|
Mouse   443 ID---IELWDNKTITSGLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALVHKLPEKN 504

  Fly   522 FQMLDMVICHLTDVSRKYEKNKMSVFNLGVVFGPTLLRPREESVAAILDIKFNNIVINILIDNYE 586
            .:|||::|.||..||...::|.|::.||||:|||||:|.:||:|||:::|||.|||:.|||::||
Mouse   505 REMLDILIKHLLKVSLHSQQNLMTISNLGVIFGPTLMRAQEETVAAMMNIKFQNIVVEILIEHYE 569

  Fly   587 RIFKNKPSADIKLPDATKAPSIMYPSRSSPPTRMPRASQIGKAASTGAMGSSSNTAGNPMFLNQQ 651
            :||...|..:|.||..        .|||.  :|..||.    ..|||    |....|.       
Mouse   570 KIFHTAPDPNIPLPQP--------QSRSG--SRRTRAI----CLSTG----SRKPRGR------- 609

  Fly   652 KIYRVVSKTNCTEPTMSSSLQNIPNGDNYALGSNAMNSSGGAQCISLSPPMHMLNGILSPTIGSI 716
                   .|.|...         |:.|:|                |.||.        |..:|||
Mouse   610 -------YTPCLAE---------PDSDSY----------------SSSPD--------STPMGSI 634

  Fly   717 NNLHTISKNETSTRRYVPDTEIAPDYGIIGANNGGVTLQSHHAVPVSSTSNFRHPEYLMTTANPV 781
            .:|.:.|..:.||.:   .|...|     ...:||:..     :...|:||.:..:.|.||    
Mouse   635 ESLSSHSSEQNSTTK---STACQP-----REKSGGIPW-----ITTPSSSNGQKSQGLWTT---- 682

  Fly   782 TQSGSSSHIYTNTS-SAGANSSNRISL-SNVSPPNTAMRKERFLGSASGPQQHPPVQRGLHSYGQ 844
            :...||....|.|. .:...|...|:: .|||||...::|        ||.       ||....:
Mouse   683 SPESSSREDATKTDVESDCQSVASITIPGNVSPPIDLVKK--------GPY-------GLSGLKR 732

  Fly   845 TKHYSPLMPTSTSSSNDSVCDSLSSNNGLGSSIVANSGNSGNVAQHLSARNTNDYALISSQNSSL 909
            :...|.|...|.:..|.|...|:.|...:||.                          .|..:..
Mouse   733 SSASSSLRSISAAEGNKSYSGSIQSLTSIGSK--------------------------ESPKAIP 771

  Fly   910 SPHLGPTCDEVVTATTLPSVSLSCGGTASESTEYPPSKMHRNRDVNQIKRDLSTGTARVRTLYAC 974
            :|.|.|   ::.....|.:.| |.|.....|.....:::..|..   ..:.:|:| .:.:.:|:|
Mouse   772 NPELPP---KMCRRLRLDTAS-SNGYQRPGSVVAAKAQLFENAG---SPKPVSSG-RQAQAMYSC 828

  Fly   975 MGESEGELSFEPNQIITNVRYSHEPGWLQGTLNGKTGLIPENYVEHL 1021
            ..|...||||....|.:||..|.|||||:.|..|:|||:|||||..|
Mouse   829 KAEHSHELSFPQGAIFSNVHPSVEPGWLKATYEGRTGLVPENYVVFL 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrafNP_001285296.1 BAR_RhoGAP_OPHN1-like 27..233 CDD:153286 91/205 (44%)
BAR-PH_GRAF_family 273..390 CDD:269953 47/122 (39%)
PH 279..383 CDD:278594 37/109 (34%)
RhoGAP 383..584 CDD:295372 100/200 (50%)
SH3_GRAF-like 967..1020 CDD:212815 26/52 (50%)
Arhgap42NP_001359492.1 BAR_GAP10-like 19..225 CDD:153318 91/205 (44%)
BAR-PH_GRAF_family 267..376 CDD:269953 47/122 (39%)
RhoGAP 369..567 CDD:383032 100/200 (50%)
SH3_GRAF3 821..875 CDD:212999 26/53 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836298
Domainoid 1 1.000 148 1.000 Domainoid score I4439
eggNOG 1 0.900 - - E1_KOG1451
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 604 1.000 Inparanoid score I931
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45894
OrthoDB 1 1.010 - - D306399at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44089
orthoMCL 1 0.900 - - OOG6_101903
Panther 1 1.100 - - O PTHR12552
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1094
SonicParanoid 1 1.000 - - X614
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.800

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