DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Graf and Chn1

DIOPT Version :9

Sequence 1:NP_001285296.1 Gene:Graf / 32522 FlyBaseID:FBgn0030685 Length:1025 Species:Drosophila melanogaster
Sequence 2:XP_006498620.2 Gene:Chn1 / 108699 MGIID:1915674 Length:541 Species:Mus musculus


Alignment Length:469 Identity:121/469 - (25%)
Similarity:187/469 - (39%) Gaps:142/469 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 GMHEREYIQESL-----SYVLRIQEVQERIKFEFVEILLAFISGWLVFYHTAHEQAEDHRDYLQD 235
            ||..||...:.|     ||::|..:.|...    ..:.|.|.|           |..:.|.| .|
Mouse   160 GMISREETDQLLSVAEGSYLIRESQRQPGT----YTLALRFGS-----------QTRNFRLY-YD 208

  Fly   236 LRHKVQKTRENFEEAREKVTE-LKTKYMEKRTKPEEIFTKR---------GYLFL------MEKS 284
            .:|.|.:.|  ||...:.||: |.|.|:|  ||..|...|.         ||..|      .:..
Mouse   209 GKHFVGEKR--FESIHDLVTDGLITLYIE--TKAAEYIAKMTINPIYEHIGYTTLNREPAYKQHM 269

  Fly   285 SILKISLLEPFKAT-----------------WTKYY----------------CTFKKQKREFTML 316
            ::||.:..|. :||                 |.:|.                |.....|      
Mouse   270 AVLKETHDEK-EATGQDGVSEKRVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK------ 327

  Fly   317 QFNQMNHNFTRPEARDDEKLTLFSCQRRASEFEKRFCFDLTFKEKPGVVYTFQALSEKDHRYWIS 381
            |.::|..|..:|:.:..:|  ::||             |||...|.                   
Mouse   328 QCSKMVPNDCKPDLKHVKK--VYSC-------------DLTTLVKA------------------- 358

  Fly   382 AMDGTEPTYLAPGKIKVSEAYHLDEAGFMFIRRCIQVLEIRGLEDEGIYRKSGVGTKISKLLALG 446
                                 |:.:.. |.:..||:.:|.|||..||:||.||....|..:....
Mouse   359 ---------------------HITKRP-MVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 401

  Fly   447 LNQKESDDVFVDDKYRDLMESNTIASALKMYLRNLNEPLMTYQYHSDFIEAAKQETLNQRVNEVH 511
            ....|..|:.| :.|.|:   |.|..|||:|.|:|..||:||..:..|||:||....::::..:|
Mouse   402 DRDGEKADISV-NMYEDI---NIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH 462

  Fly   512 KLVYKLPQPNFQMLDMVICHLTDVSRKYEKNKMSVFNLGVVFGPTLLR-PREESVAAILDIKFNN 575
            :.:..||..:.:.|..::.||..|:...::|.||..|||:||||||:| |..:.:||:.||::..
Mouse   463 EALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALNDIRYQR 527

  Fly   576 IVINILIDNYERIF 589
            :|:.:||.|.:.:|
Mouse   528 LVVELLIKNEDILF 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrafNP_001285296.1 BAR_RhoGAP_OPHN1-like 27..233 CDD:153286 14/61 (23%)
BAR-PH_GRAF_family 273..390 CDD:269953 24/164 (15%)
PH 279..383 CDD:278594 21/142 (15%)
RhoGAP 383..584 CDD:295372 65/201 (32%)
SH3_GRAF-like 967..1020 CDD:212815
Chn1XP_006498620.2 SH2_a2chimerin_b2chimerin 150..236 CDD:198215 27/95 (28%)
C1_1 291..337 CDD:365894 7/51 (14%)
RhoGAP_chimaerin 348..541 CDD:239837 72/250 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1094
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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