DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT6 and cct4

DIOPT Version :9

Sequence 1:NP_573066.1 Gene:CCT6 / 32518 FlyBaseID:FBgn0027329 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_012818347.1 Gene:cct4 / 448604 XenbaseID:XB-GENE-974483 Length:561 Species:Xenopus tropicalis


Alignment Length:477 Identity:150/477 - (31%)
Similarity:244/477 - (51%) Gaps:18/477 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSGAGDIKITKDGNVLLHEMQIQHPTASMIAR 79
            :.||....||||.|.:.|.:||:|||||..||:..|.||:.||.||..:|..||:.||.|.|:..
 Frog    32 KPAQIRFSNISAGKAVADAVRTSLGPKGMDKMIQDGKGDVTITNDGATILKLMQVLHPAAKMLVE 96

  Fly    80 ASTAQDDSTGDGTTTTVMLIGELLKQADIYLSEGLHPRIMTDGFEKARDKALEVLDQVKVPVEI- 143
            .|.|||...|||||:.|::.|.||......|.:|:||..:::.|:.|.||.:|||..:...||: 
 Frog    97 LSKAQDIEAGDGTTSVVVIAGALLDACAKLLQKGIHPTTISESFQLASDKGIEVLTNMSQSVELS 161

  Fly   144 NKKNLVEVANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDLHMVELMEMQHKSDTDTQL 208
            :::.|:..|.|||.:||....:.||..:.|:||:.:........|||..:::::....:..|.::
 Frog   162 DRETLLNSATTSLNSKVVSQYSSLLAPMSVDAVMKVIDPQTANSVDLRDIKIVKKLGGTIDDCEM 226

  Fly   209 VRGLVMDHGARHPDMPKRLENAYILTANVSLEYEKAEVNSGFFYKTAEEREAFVRAEREFIDQRV 273
            |.|||:...|.:..: .|:|.|.|......|...|.::::........:.:..:|.||.:|...|
 Frog   227 VDGLVLTQKAANTGV-TRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERTYILNLV 290

  Fly   274 KKVIELKRSVCDGTDKTFVLINQKGI-----DPISLDALAKEGILALRRAKRRNMERLSLACGGT 333
            |   ::|::.|:      ||:.||.|     ..::|..|.|..|:.::..:|.::|.:....|..
 Frog   291 K---QIKKAGCN------VLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTK 346

  Fly   334 AMNSFDDLQEEHLGYAGVVYEHVL-GENKYTFVEDCKNP-LSVTILIKGPNKHTITQIKDAIRDG 396
            .:...|....:.|..|.:..|..| |..|...:..|.|| .:|||:::|.||..|.:.:.:|.|.
 Frog   347 PVAHIDQFTADMLASAELAEEVSLNGSGKLVKITGCANPGKTVTIVVRGSNKLVIEEAERSIHDA 411

  Fly   397 LRAINNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRLAVQAFADALLVIPKTLAVNSGYDA 461
            |..|...:..:||:.|.||.|:.....|..:..|:.|.....::||||||.:||.|||.|:|.:.
 Frog   412 LCVIRCLVKKRALIAGGGAPEIELSLRLNEYARTLSGMESYCIRAFADALEIIPFTLAENAGLNP 476

  Fly   462 QDTIVKLTVEDRLSPELVGLDL 483
            ..|:.:|........:..|:::
 Frog   477 ISTVTELRNRHAQGEKTAGINV 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT6NP_573066.1 chap_CCT_zeta 3..532 CDD:274088 150/477 (31%)
TCP1_zeta 7..528 CDD:239458 150/477 (31%)
cct4XP_012818347.1 TCP1_delta 28..500 CDD:239454 150/477 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.