DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT6 and cct-2

DIOPT Version :9

Sequence 1:NP_573066.1 Gene:CCT6 / 32518 FlyBaseID:FBgn0027329 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_741031.1 Gene:cct-2 / 174421 WormBaseID:WBGene00000378 Length:529 Species:Caenorhabditis elegans


Alignment Length:544 Identity:147/544 - (27%)
Similarity:270/544 - (49%) Gaps:45/544 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSG----AGDIKITKDGN 61
            |..:.:|...|:..|...|...:...|..:.|::::.|||||..|:|:||    ||.||:|.||.
 Worm     1 MLPVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGA 65

  Fly    62 VLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIGELLKQADIYLSEGLHPRIMTDGFEKA 126
            .:|..:.:.:|.|.::...|..||...|||||:..:|..||||:|:..:::.:||:.:..|:.:|
 Worm    66 TILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRA 130

  Fly   127 RDKALEVLDQVKVPVEIN-KKNLVEVANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDL 190
            ...|.|.|.:..:....| :.:|:::|.|:|.:|:.....:....:.|:|||.:..:.     :|
 Worm   131 LGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRLKGSG-----NL 190

  Fly   191 HMVELMEMQHKSDTDTQLVRGLVMDHGARHPDM--PKRLENAYILTANVSLEYEKAEVNSGFFYK 253
            ..:::::....|..::.|..|.:::   :.|.|  |:|:|.|.||.||..::.:|.:        
 Worm   191 DAIQIIKKLGGSMNESYLDEGFLLE---KLPGMFQPRRVEKAKILIANTPMDTDKVK-------- 244

  Fly   254 TAEEREAFVRAEREFIDQRVKKVIEL----KRSVCDGTDKTF-----VLINQKGI--DPISLDAL 307
                    |...|..:| .|.||.||    |..:.:..||..     |.||::.|  .|..|.|.
 Worm   245 --------VFGSRVRVD-GVAKVAELEAAEKLKMKEKVDKILAHNCNVFINRQLIYNYPEQLFAD 300

  Fly   308 AKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAGVVYEHVLGENKYTFVEDCKNPL 372
            ||  ::|:..|....:|||:|..||..:::||..|....|...::.|.::||::.......|...
 Worm   301 AK--VMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEEIMIGEDRLLRFSGVKLGE 363

  Fly   373 SVTILIKGPNKHTITQIKDAIRDGLRAINNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRL 437
            :.:::::|..:..:.:.:.::.|.|..:...:.:...|.||||.|:...:.:......:.||..|
 Worm   364 ACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEAL 428

  Fly   438 AVQAFADALLVIPKTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNYIV 502
            ||:||..||..:|..:..|:|.|:.:.:.:|..|.......:|:|:..||......|||.::|.|
 Worm   429 AVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHANGRHNMGIDIEKGEVADVTKLGVIESYNV 493

  Fly   503 KKQILNSCSIIASNLLLVDEVMRA 526
            |..:::|.:.....:|.||::::|
 Worm   494 KLCMVSSAAEATEQILRVDDIIKA 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT6NP_573066.1 chap_CCT_zeta 3..532 CDD:274088 146/542 (27%)
TCP1_zeta 7..528 CDD:239458 146/538 (27%)
cct-2NP_741031.1 chap_CCT_beta 5..522 CDD:274082 146/540 (27%)
TCP1_beta 6..520 CDD:239452 146/539 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.