DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8944 and su(Hw)

DIOPT Version :10

Sequence 1:NP_573065.1 Gene:CG8944 / 32517 FlyBaseID:FBgn0030680 Length:762 Species:Drosophila melanogaster
Sequence 2:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster


Alignment Length:690 Identity:131/690 - (18%)
Similarity:209/690 - (30%) Gaps:268/690 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 TDADTALLEPQMVIKQE---LQDLPCSDDDVVAGE-EDDDEQRLNDSEADEDEAILPESDVPVVS 159
            |.|||.:    .|:.:|   :..:...|::||.|. |:::.|.:..:|.|||             
  Fly   144 TKADTTV----TVVTEEDDTIDFILADDEEVVPGRIENNNGQEIVVTEDDED------------- 191

  Fly   160 SKTRARKKVTKQRQRDMSSELLIAGDGDSSMDDYGDPDHSYMDDNSGEYMDFAGFDGVNHSGFGT 224
                                  :..|||.                          ||.:.||.|.
  Fly   192 ----------------------LGEDGDE--------------------------DGEDSSGKGN 208

  Fly   225 ESDFLSYDEMVEESLLGRDREVTMHIKDRKMIQFLIHSYQRNPFLWDHGNAQFRDRVKRARFLDW 289
            .|.             .:.:|:..|:..:     ...:::|...|..|                 
  Fly   209 SSQ-------------TKIKEIVEHVCGK-----CYKTFRRVQSLKKH----------------- 238

  Fly   290 IVLEF---KSRFNISLAKDAITRKWDNLRTVYKRECNRMALEKTNI----STLWYFKELHFLNEV 347
              |||   .|.:::        ||.|.|:.:.|.|.:.:.:||.:|    |..:....|..:|  
  Fly   239 --LEFCRYDSGYHL--------RKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHIN-- 291

  Fly   348 YSYNDKMSDAVVKETSYRRRFSAIWNDTSTAKLLSMVKRYQCFYNRFDPDYRSKERRGEGLHQMA 412
               ......:...:|||.|......::                ::.|.....:...|.|.|  :|
  Fly   292 ---CPDCPKSFKTQTSYERHIFITHSE----------------FSDFPCSICNANLRSEAL--LA 335

  Fly   413 IELQQLIDVTTIQISKRISQLRFDYSKQKMERLNSERLGKKFIANYLYYDQMHF---MDDDIPPF 474
            :..:|                    .|.:.:....:..||.|..:|.......:   ..::....
  Fly   336 LHEEQ--------------------HKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTM 380

  Fly   475 KCAHCPEIVQTLRELDLHMLTH-------QPSLGGGYYCNICSIQFHNAQEFDNHKQLHLGGVTE 532
            .|..|..:...|..|..|:..|       :|.    |.|:.|...|::....:.|.:.|.|   |
  Fly   381 SCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPE----YMCHTCKNCFYSLSTLNIHIRTHTG---E 438

  Fly   533 IKFNCELCTASFREKANYDEHLRRHNEELFLPSLALNHSIMEGGLGDDEIGVEGEESRGSGSRRK 597
            ..|:|:||...|.......:|.|.|..|                                     
  Fly   439 KPFDCDLCDKKFSALVALKKHRRYHTGE------------------------------------- 466

  Fly   598 RRHAAKATDDMVDDDDRIGGGGGGGSGGGGTDIAKPYGCDVCRRSFATPGHLNAHRIVHQDERER 662
                                              |||.|.||.::||....||.|...|..||. 
  Fly   467 ----------------------------------KPYSCTVCNQAFAVKEVLNRHMKRHTGERP- 496

  Fly   663 CYKCDYPQCNKSFVARNSLFEHLKQHYSNEEFKCDICGKTFKSTKNLQNHKQIHDKIKR--YVCQ 725
             :|||  :|.|||:....|..|.|.|.  ..|.|:.|.:.||:.|.|:.|.:.|.:.||  :.|.
  Fly   497 -HKCD--ECGKSFIQATQLRTHSKTHI--RPFPCEQCDEKFKTEKQLERHVKTHSRTKRPVFSCA 556

  Fly   726 ICGSAFAQAAGLYLH--------KRRHNRPNGAVGAVGRS 757
            .|...|...|.|..|        |::.:....||..:.|:
  Fly   557 ECKRNFRTPALLKEHMDEGKHSPKQQRSSMRSAVKIMERT 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8944NP_573065.1 MADF_DNA_bdg 259..344 CDD:463144 18/91 (20%)
MADF 379..472 CDD:214738 11/95 (12%)
C2H2 Zn finger 476..496 CDD:275368 5/19 (26%)
C2H2 Zn finger 506..526 CDD:275368 4/19 (21%)
C2H2 Zn finger 537..557 CDD:275368 6/19 (32%)
C2H2 Zn finger 636..656 CDD:275368 8/19 (42%)
COG5048 <666..734 CDD:227381 24/69 (35%)
C2H2 Zn finger 666..688 CDD:275368 9/21 (43%)
C2H2 Zn finger 696..716 CDD:275368 7/19 (37%)
C2H2 Zn finger 724..744 CDD:275368 7/27 (26%)
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 4/20 (20%)
COG5048 <312..517 CDD:227381 58/324 (18%)
C2H2 Zn finger 321..341 CDD:275368 5/41 (12%)
C2H2 Zn finger 350..368 CDD:275368 4/17 (24%)
C2H2 Zn finger 382..402 CDD:275368 5/19 (26%)
C2H2 Zn finger 415..435 CDD:275368 4/19 (21%)
C2H2 Zn finger 443..463 CDD:275368 6/19 (32%)
COG5048 <467..620 CDD:227381 46/136 (34%)
C2H2 Zn finger 471..491 CDD:275368 8/19 (42%)
C2H2 Zn finger 499..519 CDD:275368 9/21 (43%)
C2H2 Zn finger 525..545 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..572 CDD:275368 5/16 (31%)
C2H2 Zn finger 598..615 CDD:275371
Blue background indicates that the domain is not in the aligned region.

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