DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8944 and Znf48

DIOPT Version :10

Sequence 1:NP_573065.1 Gene:CG8944 / 32517 FlyBaseID:FBgn0030680 Length:762 Species:Drosophila melanogaster
Sequence 2:NP_001388702.1 Gene:Znf48 / 103690203 RGDID:9115869 Length:590 Species:Rattus norvegicus


Alignment Length:544 Identity:100/544 - (18%)
Similarity:156/544 - (28%) Gaps:245/544 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 RFDPDYRSKERRGEGLHQMAIELQQLIDVTTIQISKRISQLRFDYSKQKMERLNS--------ER 449
            |..|:::.:|:.|.| |::.                        .:..|.|.:.|        |.
  Rat    16 RDGPEFKEEEQLGPG-HEVG------------------------NASLKPEGIQSWDDLWVRREG 55

  Fly   450 LGKKFIANYLYYDQMHFMDDDIP---------------PFKCAHCPEIVQTLRELDLHMLTH--- 496
            |||            |...|.:|               ...|..|.:..:.:.:|..|..||   
  Rat    56 LGK------------HQPRDAVPRVLGEPRWGQGSNDRAAVCGECGKSFRQMSDLVKHQRTHTGE 108

  Fly   497 QPSLGGGYYCNICSIQFHNAQEFDNHKQLHLG-----------GVTEIKFN----------CELC 540
            :|     |.|.:|...|.::.....|::.|.|           |..::..:          |..|
  Rat   109 KP-----YKCGVCGKGFGDSSARIKHQRTHTGEKPYRVRPPAPGPPKMPRSRIPAGERPTICGEC 168

  Fly   541 TASFREKANYDEHLRRHNEELFLPSLALNHSIMEGGLGDDEIGVEGEES-RG------------- 591
            ..|||:.::..:|.|.|..|     ......|...|.||....::.:.: ||             
  Rat   169 GKSFRQSSDLVKHQRTHTGE-----KPYKCGICGKGFGDSSARIKHQRTHRGDQLPRPVVPRRQP 228

  Fly   592 SGSRRKRRHAAKATDD-----------------MVDDDDRIGGGGGGGSGGGGTDIAKPYGCDVC 639
            |.:..:..|..||.|.                 :......:|              .||:|||||
  Rat   229 SQAAPEATHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLG--------------PKPFGCDVC 279

  Fly   640 RRSFATPGHLNAHRIVHQDER--------------------------ERCYKCDYPQCNKSFVAR 678
            .:.||....|..|..||..|:                          :|.:.|  |:||:||...
  Rat   280 GKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGQRPHAC--PECNRSFSLS 342

  Fly   679 NSLFEHLKQHYSNEEF------------------------------------------------- 694
            ::|..|...|...::|                                                 
  Rat   343 STLLRHRLTHMEPQDFSFSAYPVAPLIPSPPPPPLGTSPSLTPRSPSQSSDGPFGLPGLEPEPGG 407

  Fly   695 ----------------KCDICGKTFKSTKNLQNHKQIHDKIKRYVCQICGSAFAQAAGLYLHKRR 743
                            ||..|||.|:.:.:|..|.::|...|.|:|..||..||.::....|.|.
  Rat   408 PQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFADSSARVKHLRT 472

  Fly   744 HN-------------RPNGAVGAV 754
            |.             ||:...|:|
  Rat   473 HQGERTRPPPPPTLLRPHNPPGSV 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8944NP_573065.1 MADF_DNA_bdg 259..344 CDD:463144
MADF 379..472 CDD:214738 15/86 (17%)
C2H2 Zn finger 476..496 CDD:275368 4/19 (21%)
C2H2 Zn finger 506..526 CDD:275368 4/19 (21%)
C2H2 Zn finger 537..557 CDD:275368 7/19 (37%)
C2H2 Zn finger 636..656 CDD:275368 8/19 (42%)
COG5048 <666..734 CDD:227381 26/132 (20%)
C2H2 Zn finger 666..688 CDD:275368 8/21 (38%)
C2H2 Zn finger 696..716 CDD:275368 7/19 (37%)
C2H2 Zn finger 724..744 CDD:275368 7/19 (37%)
Znf48NP_001388702.1 zf-C2H2 84..105 CDD:395048 4/20 (20%)
C2H2 Zn finger 85..105 CDD:275368 4/19 (21%)
zf-H2C2_2 97..120 CDD:463886 8/27 (30%)
C2H2 Zn finger 113..133 CDD:275368 4/19 (21%)
COG5048 161..571 CDD:227381 69/357 (19%)
C2H2 Zn finger 165..185 CDD:275368 7/19 (37%)
C2H2 Zn finger 193..213 CDD:275368 4/19 (21%)
C2H2 Zn finger 248..268 CDD:275368 0/19 (0%)
C2H2 Zn finger 276..296 CDD:275368 8/19 (42%)
C2H2 Zn finger 304..324 CDD:275368 0/19 (0%)
C2H2 Zn finger 332..352 CDD:275368 8/21 (38%)
C2H2 Zn finger 425..445 CDD:275368 7/19 (37%)
C2H2 Zn finger 453..537 CDD:275368 12/44 (27%)
C2H2 Zn finger 545..565 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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