DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11679 and RMD1

DIOPT Version :9

Sequence 1:NP_573063.1 Gene:CG11679 / 32515 FlyBaseID:FBgn0030678 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_010283.3 Gene:RMD1 / 851563 SGDID:S000002159 Length:430 Species:Saccharomyces cerevisiae


Alignment Length:420 Identity:103/420 - (24%)
Similarity:185/420 - (44%) Gaps:85/420 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 DRRRWLASEATSSAAAPAQAAS-----VPRT-QTQPRVKPLP----------LAEERLESILSPI 78
            |.|:..||...|:...|....|     ..|| :|..::|.||          |.:.:.:.:.|.:
Yeast    40 DTRKSRASYTGSAMINPTSKQSRTGSGAQRTSRTAQKLKLLPEEPFQRDSERLTDLKNQEVYSQV 104

  Fly    79 RTRIIRKKRLAIDELSALG------FLNTRGYTTAEEYNLEDLQIALRE-QNLYET--------- 127
             .||  |.:.|..:...||      ...:..|.||..||:::|...|:: :.|:.|         
Yeast   105 -NRI--KDKPARRDAEKLGKAHRHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHPKLFDECL 166

  Fly   128 ------------KRFFSTD--NLDVEQNVLFVAAKYPTGQQPREIFFFREGSVVFWNCSDIETNN 178
                        |||...|  .||.|...:.|:.|:|      ::|.|..|.||.|..::.|...
Yeast   167 YTPFIYNDWRGDKRFEDEDVIRLDDEGGEIIVSDKHP------DLFIFEYGVVVMWGFTEREEKA 225

  Fly   179 VLSFLRAFERESYVSALVHGESEVMPYTYIPSTAVDVEGDLVAESSDFNVTS----RAFFQNGKF 239
            .|:.:..||:|..                       .|.|:..|..::.||.    |.:   ..|
Yeast   226 FLNDIEKFEKEKL-----------------------AEEDIQVEEFNYYVTKSYQPRIY---NDF 264

  Fly   240 FVTADTDSFLYKYTFSNAMAQSIKLGMWEATLDRYIDSIEHLTEDLKRGRRLRISRAAMLRKTGE 304
            ....|..:::.|.:.|:|:|||:|:.::|..:|..|:..:.:.:::....::.:|:..:::..||
Yeast   265 ITLRDGSNYMVKLSISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKEDIMKSIGE 329

  Fly   305 LFALRHVINLSSDLLDAPDFYWDREELEALYLQVCSYFSISRRTKVMNEKINHCVELAELVSHNL 369
            ||.||..|||...:||:|:..|...:||.:|.....|..|::|..::|:::....:|.:::...|
Yeast   330 LFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLEVISDLLQMLKEQL 394

  Fly   370 NDAHHIRLEWMIIILIMVEVGFEVLHFVSD 399
            ..:|...||:::|:|:.|||...|::.|.|
Yeast   395 GHSHEEYLEFIVILLVGVEVLISVINIVVD 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11679NP_573063.1 DUF155 158..352 CDD:280704 49/197 (25%)
RMD1NP_010283.3 Rmd1 68..429 CDD:224637 96/392 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344876
Domainoid 1 1.000 87 1.000 Domainoid score I1842
eggNOG 1 0.900 - - E1_COG1723
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I1323
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003403
OrthoInspector 1 1.000 - - otm46695
orthoMCL 1 0.900 - - OOG6_101806
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2342
SonicParanoid 1 1.000 - - X2300
TreeFam 1 0.960 - -
1110.680

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