DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp6 and ACTRT3

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_115876.3 Gene:ACTRT3 / 84517 HGNCID:24022 Length:372 Species:Homo sapiens


Alignment Length:412 Identity:111/412 - (26%)
Similarity:186/412 - (45%) Gaps:68/412 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVLDNGAHTAKVGLANQDEPH-VVPNCIMKAKSERRRA------FVGNQIDECRDTSALYYILAF 63
            ||:|||:...|.|:|...||. :.||.|.:||.:.|.|      .||:|..:.|  |:|:.....
Human     8 VVIDNGSGMIKAGVAGCREPQFIYPNIIGRAKGQSRAAQGGLELCVGDQAQDWR--SSLFISYPV 70

  Fly    64 QRGYLLNWHTQKTVWDYIFSK-------DGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYK 121
            :||.:.:|...:.:|.:|:..       ||        .::||||.:|..:.::...|:.||...
Human    71 ERGLITSWEDMEIMWKHIYDYNLKLKPCDG--------PVLITEPALNPLANRQQITEMFFEHLG 127

  Fly   122 VDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGK 186
            |...|.:..|.||.|     :...||     .::::.|...|..||...|..:..|::::|:.|.
Human   128 VPAFYMSIQAVLALF-----AAGFTT-----GLVLNSGAGVTQSVPIFEGYCLPHGVQQLDLAGL 182

  Fly   187 ALTNQLKELISYRHLNVMDES--HVVNQIKEDVCFVAEDFKQAMQVHYSEEKRRE---VTVDYVL 246
            .|||.|..|:....:.::..|  .:|..|||..|:||        ::|.||..::   :...|.|
Human   183 DLTNYLMVLMKNHGIMLLSASDRKIVEDIKESFCYVA--------MNYEEEMAKKPDCLEKVYQL 239

  Fly   247 PDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACP 311
            ||            ||         ::.|.::.|:.||.||:|..:.::..||.:.....:..|.
Human   240 PD------------GK---------VIQLHDQLFSCPEALFSPCHMNLEAPGIDKICFSSIMKCD 283

  Fly   312 WEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPN 376
            .........||::.|||..|||...||.:|:..:.|.:..|.:|.|.:.....|.||..:|:...
Human   284 TGLRNSFFSNIILAGGSTSFPGLDKRLVKDIAKVAPANTAVQVIAPPERKISVWMGGSILASLSA 348

  Fly   377 FEEFVYTQDDYEEYGFQGINQR 398
            |::...|..:::|.|...::||
Human   349 FQDMWITAAEFKEVGPNIVHQR 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 109/410 (27%)
COG5277 6..391 CDD:227602 108/403 (27%)
ACTRT3NP_115876.3 ACTIN 7..372 CDD:214592 111/412 (27%)
NBD_sugar-kinase_HSP70_actin 9..372 CDD:302596 110/411 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.