DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and Actrt3

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_083966.1 Gene:Actrt3 / 76652 MGIID:1923902 Length:369 Species:Mus musculus


Alignment Length:402 Identity:108/402 - (26%)
Similarity:185/402 - (46%) Gaps:51/402 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVLDNGAHTAKVGLANQDEPH-VVPNCIMKAK----SERRRAFVGNQIDECRDTSALYYILAFQR 65
            ||:|||:...|.|||...||. |.||.:.::|    ..|:...||:|..|.|...::.|  ..:|
Mouse     8 VVIDNGSGMIKAGLAGTREPQFVYPNILGRSKGHTADSRQELCVGDQAQERRSFLSISY--PVER 70

  Fly    66 GYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTA 130
            |.:.:|...:.:|.:|:..: :..:..:..:::|||.:|..:.::...|:.||...|...|.:..
Mouse    71 GLISSWGDMEIMWKHIYDYN-LNLNASDGPVLVTEPALNPLADRQHISEVFFENLGVPAFYMSAQ 134

  Fly   131 ADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKEL 195
            |.||.|     :...||     .::::.|...|..||...|..:..|::::::.|..||:.|..|
Mouse   135 AVLALF-----AAGFTT-----GLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGSDLTSYLMML 189

  Fly   196 ISYRHLNVM--DESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVD--YVLPDFTTVKRGY 256
            :....:.::  .:..||..|||:.|:||        ::|.:|..::..::  |.|||..|||   
Mouse   190 LKGDGIMLLRTGDRKVVTDIKENACYVA--------MNYEDEMTKDSNLEKIYTLPDGKTVK--- 243

  Fly   257 VRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWEAHRELLLN 321
                              |..:.|..||.||:|..:.|...||.:.....:..|..:.......|
Mouse   244 ------------------LHKQLFHCPEALFSPYLVNVDAPGIDKMCFGSIMKCDTDLRNSFFSN 290

  Fly   322 ILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQDD 386
            |::.|||..|||...||.:|:..|.|.:..|.:|.|.:.....|.||..:|:...|::...|..:
Mouse   291 IILSGGSTSFPGLDKRLIKDVAKLAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAE 355

  Fly   387 YEEYGFQGINQR 398
            :||.|...::||
Mouse   356 FEEVGPNIVHQR 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 106/400 (27%)
COG5277 6..391 CDD:227602 105/393 (27%)
Actrt3NP_083966.1 ACTIN 5..369 CDD:214592 108/402 (27%)
NBD_sugar-kinase_HSP70_actin 9..369 CDD:302596 107/401 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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