DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and Act79B

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_001262200.1 Gene:Act79B / 40444 FlyBaseID:FBgn0000045 Length:376 Species:Drosophila melanogaster


Alignment Length:410 Identity:113/410 - (27%)
Similarity:197/410 - (48%) Gaps:55/410 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ANAVVVLDNGAHTAKVGLANQDEPHVV-PNCIMKAKSE-------RRRAFVGNQIDECRDTSALY 58
            |:|:|| |||:...|.|.|..|.|..| |:.:.:.:.:       ::..:||::....|...:|.
  Fly     6 ASALVV-DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILSLK 69

  Fly    59 YILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVD 123
            |  ..:.|.:.||...:.||.:.|..: :..:.|...:::||..:|.::.:|...:|:||.:...
  Fly    70 Y--PIEHGIITNWDDMEKVWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 131

  Fly   124 GVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKAL 188
            .:|....|.|:.:     :..|||     .|::|.|...:|.||...|..:...|.|:|:.|:.|
  Fly   132 AMYVAIQAVLSLY-----ASGRTT-----GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 186

  Fly   189 TNQLKELISYR--HLNVMDESHVVNQIKEDVCFVAEDFKQAM---QVHYSEEKRREVTVDYVLPD 248
            |:.|.::::.|  ......|..:|..|||.:|:||.||:|.|   ....|.||      .|.|||
  Fly   187 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK------SYELPD 245

  Fly   249 FTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWE 313
                                 .|::::.||||..||.||.||.:|::..||.|.|...:..|..:
  Fly   246 ---------------------GQVITIGNERFRTPEALFQPSFLGMESCGIHETVYQSIMKCDVD 289

  Fly   314 AHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFE 378
            ..::|..|.::.||:..:||...|:::::.||.|..:::.:|.|.:.....|.||..:|:...|:
  Fly   290 IRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 354

  Fly   379 EFVYTQDDYEEYGFQGINQR 398
            :...::.:|:|.| .||..|
  Fly   355 QMWISKQEYDESG-PGIVHR 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 111/407 (27%)
COG5277 6..391 CDD:227602 107/397 (27%)
Act79BNP_001262200.1 PTZ00281 1..376 CDD:173506 113/410 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467754
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.861654 Normalized mean entropy S1456
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.900

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