DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and actr3

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_989368.1 Gene:actr3 / 394999 XenbaseID:XB-GENE-5915063 Length:418 Species:Xenopus tropicalis


Alignment Length:439 Identity:114/439 - (25%)
Similarity:177/439 - (40%) Gaps:97/439 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VLDNGAHTAKVGLANQDEPH-VVPNCIMKAKSERRRAFVGNQI----------------DECRDT 54
            |:|.|....|:|.|...||. ::|:||...:|    |.||:|.                ||..|.
 Frog     9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES----AKVGDQAQRRLMKGVDDLDFHIGDEAIDK 69

  Fly    55 SALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEE 119
            .........:.|.:.:|...:...:.|..| .:....|:...::|||.:|....:|.|.||:||.
 Frog    70 PTYATKWPIRHGIVEDWDLMERFMEQIIFK-YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 133

  Fly   120 YKVDGVYKTTAADLA-AFNYVA-DSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRID 182
            :.|.|:|....|.|| |.::.: ...|||    |...:||.|...|||:|...|..:...|:.|.
 Frog   134 FNVPGLYIAVQAVLALAASWTSRQVGERT----LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIP 194

  Fly   183 MGGKALTNQLKELISYRHLNVMDES--HVVNQIKEDVCFVAED---------------FKQAMQV 230
            :.|:.:|..:::|:..|.:.:..|.  .....:||...:|..|               .||...|
 Frog   195 IAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERFSYVCPDLVKEFSKYDTDGAKWIKQYTGV 259

  Fly   231 HYSEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQ 295
            :...:|...:.|.|                                 |||..||:.|:|......
 Frog   260 NAVSKKEFSIDVGY---------------------------------ERFLGPEIFFHPEFANPD 291

  Fly   296 -QVGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALV------------- 346
             ...|.|.|.:.::.||.:..|.|..||::.|||..|..|..||:||::..|             
 Frog   292 FTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDVKRTVDARLKLSEELSGG 356

  Fly   347 ---PDDLEVSLICPEDPVRYA-WYGGKEVATSPNFEEFVYTQDDYEEYG 391
               |..::|.:| .....||| |:||..:|::|.|.:..:|:.||||.|
 Frog   357 RLKPKPIDVQVI-THHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 114/439 (26%)
COG5277 6..391 CDD:227602 113/437 (26%)
actr3NP_989368.1 PTZ00280 2..417 CDD:240343 114/439 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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