DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and actr3

DIOPT Version :10

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_989368.1 Gene:actr3 / 394999 XenbaseID:XB-GENE-5915063 Length:418 Species:Xenopus tropicalis


Alignment Length:439 Identity:114/439 - (25%)
Similarity:177/439 - (40%) Gaps:97/439 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VLDNGAHTAKVGLANQDEPH-VVPNCIMKAKSERRRAFVGNQI----------------DECRDT 54
            |:|.|....|:|.|...||. ::|:||...:|    |.||:|.                ||..|.
 Frog     9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES----AKVGDQAQRRLMKGVDDLDFHIGDEAIDK 69

  Fly    55 SALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEE 119
            .........:.|.:.:|...:...:.|..| .:....|:...::|||.:|....:|.|.||:||.
 Frog    70 PTYATKWPIRHGIVEDWDLMERFMEQIIFK-YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 133

  Fly   120 YKVDGVYKTTAADLA-AFNYVA-DSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRID 182
            :.|.|:|....|.|| |.::.: ...|||    |...:||.|...|||:|...|..:...|:.|.
 Frog   134 FNVPGLYIAVQAVLALAASWTSRQVGERT----LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIP 194

  Fly   183 MGGKALTNQLKELISYRHLNVMDES--HVVNQIKEDVCFVAED---------------FKQAMQV 230
            :.|:.:|..:::|:..|.:.:..|.  .....:||...:|..|               .||...|
 Frog   195 IAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERFSYVCPDLVKEFSKYDTDGAKWIKQYTGV 259

  Fly   231 HYSEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQ 295
            :...:|...:.|.|                                 |||..||:.|:|......
 Frog   260 NAVSKKEFSIDVGY---------------------------------ERFLGPEIFFHPEFANPD 291

  Fly   296 -QVGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALV------------- 346
             ...|.|.|.:.::.||.:..|.|..||::.|||..|..|..||:||::..|             
 Frog   292 FTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDVKRTVDARLKLSEELSGG 356

  Fly   347 ---PDDLEVSLICPEDPVRYA-WYGGKEVATSPNFEEFVYTQDDYEEYG 391
               |..::|.:| .....||| |:||..:|::|.|.:..:|:.||||.|
 Frog   357 RLKPKPIDVQVI-THHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ASKHA_NBD_Arp6 5..391 CDD:466816 113/437 (26%)
actr3NP_989368.1 ASKHA_NBD_Arp3-like 7..410 CDD:466822 114/439 (26%)

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