DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and Arp3

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster


Alignment Length:433 Identity:121/433 - (27%)
Similarity:192/433 - (44%) Gaps:85/433 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VLDNGAHTAKVGLANQDEPH-VVPNCIMKAKSER------RRA---------FVGNQIDECRDTS 55
            |:|.|...:|:|.|...||. ::|:.|...:|.|      ||.         |:|   ||..|.:
  Fly     9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIG---DEAFDAT 70

  Fly    56 ALYYILAFQRGYLLNW-----HTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEI 115
            ........:.|.:.:|     ..::.|:.|:.::.      |:...::|||.:|....:|.|.||
  Fly    71 GYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEP------EDHYFLLTEPPLNTPENREYTAEI 129

  Fly   116 LFEEYKVDGVYKTTAADLA-AFNYVADS-EERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGI 178
            :||.:.|.|:|....|.|| |.::.:.| ||||    |..|::|.|...|||:|...|..:...|
  Fly   130 MFETFNVPGLYIAVQAVLALAASWASRSAEERT----LTGIVVDSGDGVTHVIPVAEGYVIGSCI 190

  Fly   179 RRIDMGGKALTNQLKELISYRHLNVMDES--HVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVT 241
            :.|.:.|:.:|:.::.|:..|.:.:..|.  .....|||..|::..|..:.. ..|..|..:.:.
  Fly   191 KHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEF-AKYDTEPGKWIR 254

  Fly   242 ----VDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIP-- 300
                |:.|......|..||                     |||..||:.|:| :.......||  
  Fly   255 NFSGVNTVTKAPFNVDVGY---------------------ERFLGPEIFFHP-EFSNPDFTIPLS 297

  Fly   301 EAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVS------LICPED 359
            |.|.:.::.||.:..|.|..||::.|||..|..|..||:||::..|...|.:|      .|.|: 
  Fly   298 EIVDNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPK- 361

  Fly   360 PV----------RYA-WYGGKEVATSPNFEEFVYTQDDYEEYG 391
            |:          ||| |:||..:|::|.|.:..:|:..|||||
  Fly   362 PIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAYEEYG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 121/433 (28%)
COG5277 6..391 CDD:227602 119/431 (28%)
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 121/433 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467806
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11937
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.040

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