DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and Actbl2

DIOPT Version :10

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_001099879.1 Gene:Actbl2 / 294732 RGDID:1309504 Length:376 Species:Rattus norvegicus


Alignment Length:396 Identity:101/396 - (25%)
Similarity:186/396 - (46%) Gaps:47/396 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVLDNGAHTAKVGLANQDEPHVV-PNCIMKAKSE-------RRRAFVGNQIDECRDTSALYYILA 62
            :|:|||:...|.|....|.|..| |:.:.:.:.:       ::..:||::....|....|.|  .
  Rat     9 LVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKY--P 71

  Fly    63 FQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYK 127
            .:.|.:.||...:.:|.:.|..: :..:.:...|::||..:|.:..:|...:|:||.:....:|.
  Rat    72 IEHGVVTNWDDMEKIWYHTFYNE-LRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYV 135

  Fly   128 TTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQL 192
            ...|.|:.:     :..|||..     ::|.|...||.||...|..:..||.|:|:.|:.||:.|
  Rat   136 AIQAVLSLY-----ASGRTTGN-----VMDSGDGVTHTVPIYEGYALPHGILRLDLAGRDLTDYL 190

  Fly   193 KELISYRHLN--VMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRG 255
            .::::.|..|  ...|..:|..:||.:|:||.||:|.|....:......   .|.|||       
  Rat   191 MKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMVTAAASSSLER---SYELPD------- 245

  Fly   256 YVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWEAHRELLL 320
                          .|::::.||||..||.:|.||.:|::..||.|...:.:..|..:..::|..
  Rat   246 --------------GQVITIGNERFRCPEAIFQPSFLGIESRGIHETTFNSIMKCDVDIRKDLYA 296

  Fly   321 NILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQD 385
            |.::.|||..:||...|:::::..|.|..:::.:|.|.:.....|.||..:|:...|::...::.
  Rat   297 NTVLSGGSTMYPGIADRMQKEIVTLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361

  Fly   386 DYEEYG 391
            :|:|.|
  Rat   362 EYDEAG 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ASKHA_NBD_Arp6 5..391 CDD:466816 100/394 (25%)
Actbl2NP_001099879.1 ASKHA_NBD_actin 8..371 CDD:466823 101/396 (26%)

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