DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and Actc1

DIOPT Version :10

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_062056.1 Gene:Actc1 / 29275 RGDID:2026 Length:377 Species:Rattus norvegicus


Alignment Length:396 Identity:105/396 - (26%)
Similarity:190/396 - (47%) Gaps:47/396 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVLDNGAHTAKVGLANQDEPHVV-PNCIMKAKSE-------RRRAFVGNQIDECRDTSALYYILA 62
            :|.|||:...|.|.|..|.|..| |:.:.:.:.:       ::.::||::....|....|.|  .
  Rat    10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY--P 72

  Fly    63 FQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYK 127
            .:.|.:.||...:.:|.:.|..: :..:.|....::||..:|.::.:|...:|:||.:.|..:|.
  Rat    73 IEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYV 136

  Fly   128 TTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQL 192
            ...|.|:.:     :..|||     .|::|.|...||.||...|..:...|.|:|:.|:.||:.|
  Rat   137 AIQAVLSLY-----ASGRTT-----GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYL 191

  Fly   193 KELISYRHLNVMD--ESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRG 255
            .::::.|..:.:.  |..:|..|||.:|:||.||:..|....|.....:   .|.|||       
  Rat   192 MKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK---SYELPD------- 246

  Fly   256 YVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWEAHRELLL 320
                          .|::::.||||..||.||.||.||::..||.|...:.:..|..:..::|..
  Rat   247 --------------GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYA 297

  Fly   321 NILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQD 385
            |.::.||:..:||...|:::::.||.|..:::.:|.|.:.....|.||..:|:...|::...::.
  Rat   298 NNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 362

  Fly   386 DYEEYG 391
            :|:|.|
  Rat   363 EYDEAG 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ASKHA_NBD_Arp6 5..391 CDD:466816 104/394 (26%)
Actc1NP_062056.1 ASKHA_NBD_actin 8..372 CDD:466823 105/396 (27%)

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