DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp6 and actl6a

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:XP_005165974.1 Gene:actl6a / 192313 ZFINID:ZDB-GENE-020419-36 Length:455 Species:Danio rerio


Alignment Length:461 Identity:97/461 - (21%)
Similarity:197/461 - (42%) Gaps:89/461 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVLDNGAHTAKVGLANQDEPHV-VPNCI-----------------MKAKSERRRAFVG-NQIDEC 51
            :|.|.|:::.:.|.|.:|.|.. .|..|                 .|.|......|:. ||:...
Zfish    14 LVFDMGSYSVRAGYAGEDCPKADFPTVIGVTLDREDGSTPMETDGEKGKQSGTTYFIDTNQLRVP 78

  Fly    52 RDTSALYYILAFQRGYLLNWHTQKTVWDYIF-----SKDGIGCSLENRNIVITEPQMNFQSIQEA 111
            |:  ::..:...:.|.:.:|.:.:.:.|:.:     |:.|:      ..::::|...|.::.:|.
Zfish    79 RE--SMEVMSPLKNGMIEDWDSFQAILDHTYKMHFKSQPGL------HPVLMSEASWNTRAKREK 135

  Fly   112 TLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQ 176
            ..|::||.|.:...:...:|.|:||     :..|:|     .:::|.|.:.|..:|...|..:.|
Zfish   136 LTELMFEHYNIPAFFLCKSAVLSAF-----ANGRST-----GLVLDSGATHTTAIPVHDGYVLQQ 190

  Fly   177 GIRRIDMGGKALTNQLKELISYRHLNVMDESHVVNQIK-------------EDVCFVAEDFKQAM 228
            ||.:..:.|..::.|.:||.....:.::....:.::::             |...|:....|.::
Zfish   191 GIVKSPLAGDFMSMQCRELFQELGVEIVPPYMIASKVRPFEGYDSQLIKMFESNNFIMFSLKDSV 255

  Fly   229 Q-----VHYSEEKRREVTVDY-------VLPDFTTVKRGYVRVPGKPREDEEQQQMVSL------ 275
            :     ....:||..:||..:       |:.||   :...::|...|.:::...||.::      
Zfish   256 REGTPASWKKKEKLPQVTRSWHNYMCNTVIQDF---QASVLQVSDSPYDEQVAAQMPTVHYELPN 317

  Fly   276 ---CN---ERFTVPELLFNPSDI----GVQQVGIPEAVADCLKACPWEAHRELLLNILIVGGSAQ 330
               |:   ||..:||.||:||:.    |...:|:...|...:..|..:....|..::::.||:..
Zfish   318 GYNCDFGAERLKIPEGLFDPSNAKGLSGNTMLGVGHVVTTSVGMCDIDIRPGLYGSVVVTGGNTL 382

  Fly   331 FPGFLPRLKRDLRALVPDDLEVSLICPEDPV--RY-AWYGGKEVATSPNFEEFVYTQDDYEEYGF 392
            ..||..||.|:|....|..:.:.||.....|  |: ||.||..:|:...|::...::.:|||.|.
Zfish   383 IQGFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSAWIGGSILASLGTFQQMWISKQEYEEGGK 447

  Fly   393 QGINQR 398
            |.::::
Zfish   448 QCVDRK 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 97/459 (21%)
COG5277 6..391 CDD:227602 95/452 (21%)
actl6aXP_005165974.1 NBD_sugar-kinase_HSP70_actin 10..454 CDD:302596 97/461 (21%)
Actin 11..455 CDD:278451 97/461 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.