DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and F42C5.9

DIOPT Version :9

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_501169.1 Gene:F42C5.9 / 177504 WormBaseID:WBGene00018349 Length:552 Species:Caenorhabditis elegans


Alignment Length:411 Identity:87/411 - (21%)
Similarity:164/411 - (39%) Gaps:86/411 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANAVVVLDNGAHTAKVGLANQDEPHVVPNCIMKA---KSERRRAFVGNQI---------DECRD 53
            :...:::|:.|:.:.:.|:.. .||. :|.....|   :::..:.|||...         |..|.
 Worm   176 LTERILILELGSCSIRAGVLT-TEPS-LPQSFFPAIAVRTDDGKIFVGEDAYRPEIRHNGDFVRP 238

  Fly    54 TSALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLE-----------NRNIVITEPQMNFQS 107
            .||                |..:|..|...||.:...:.           ...::::.||.....
 Worm   239 ISA----------------TDPSVERYSIDKDVLKAVIGKVTKELKVEPWKYKVLLSIPQNIPTV 287

  Fly   108 IQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGR 172
            :....|:|..|:.|......|....|..:.|     :.||     .:::|:| ...::||.:.|.
 Worm   288 LIGELLQICLEDIKFQSAGITRQPSLILYAY-----DVTT-----GVVVDIG-ERVNIVPVIDGY 341

  Fly   173 RVLQGIRRIDMGGKALTNQLKELISYRHLNVMD-----ESHVVNQIKEDVCFVAEDFKQAMQVHY 232
            .|...|..|..|.:.:.:.|:..:|..:..:..     |..::....|...:|.||:::..:   
 Worm   342 VVESAICSIPYGSQQMGDSLRASLSAHNKGLYAFQSPVEKLILRFALEQTTYVPEDYQKEEK--- 403

  Fly   233 SEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQV 297
            ||.|...:::|...|.           ||       .|....:.|.||...|.||.|...|:...
 Worm   404 SENKETRISLDAFTPS-----------PG-------MQTRFDIDNSRFLCTEGLFKPKKWGLDTK 450

  Fly   298 GIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDL--EVSLICPEDP 360
            |:.:.:.:.:..||.::.|.|..||.:.||::..||...:|:::|..:||:.:  :|::    .|
 Worm   451 GLHQLIHEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNI----SP 511

  Fly   361 VRY--AWYGGKEVATSPNFEE 379
            .||  |:.|.:.||::..||:
 Worm   512 WRYNAAYLGAQIVASASTFED 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ACTIN 3..398 CDD:214592 87/409 (21%)
COG5277 6..391 CDD:227602 87/406 (21%)
F42C5.9NP_501169.1 ACTIN 179..552 CDD:214592 87/408 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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