DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp6 and arp-1

DIOPT Version :10

Sequence 1:NP_511165.1 Gene:Arp6 / 32514 FlyBaseID:FBgn0011741 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_497108.2 Gene:arp-1 / 175162 WormBaseID:WBGene00013168 Length:374 Species:Caenorhabditis elegans


Alignment Length:408 Identity:106/408 - (25%)
Similarity:187/408 - (45%) Gaps:51/408 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANAVVVLDNGAHTAKVGLANQDEPHV-VPNCIMKAKSERRRA-------FVGNQIDECRDTSAL 57
            :||..||:|||:...|.|.|.:.:|.| ..|.:.:.|..|..|       |:|.:.:..|...::
 Worm     6 IANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70

  Fly    58 YYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKV 122
            .|  ..:.|.:.||...:.:|:|||.:|.:....|...:::|:..:|....:|.:.||.||.:.|
 Worm    71 EY--PMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFNV 133

  Fly   123 DGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKA 187
            ..:|....|.|:.:     :..|||     .:::|.|...||.||.|.|..:...|:|:|:.|:.
 Worm   134 PALYIQMQAVLSLY-----ATGRTT-----GVVLDSGDGVTHAVPIVKGFAMKHAIQRMDLAGRD 188

  Fly   188 LTNQLKELISYR--HLNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFT 250
            :|..|:.|:...  ..:..:|..:|.::||:.|::|.|        .::.:...|...|.|||.|
 Worm   189 VTEYLRVLLRREGYEFHRSNEFEIVREMKENACYLALD--------PTKVENNSVKSSYALPDTT 245

  Fly   251 TVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWEAH 315
            .::                     :.|..|..||:||.|..||.:..|:...|...:..|..:..
 Worm   246 KIE---------------------ISNSLFRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCDVDLR 289

  Fly   316 RELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEF 380
            :.|..||::.||:..|.||..||..::|.:.|.|.::.:...::.....|.||..||:...|.:.
 Worm   290 QTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKM 354

  Fly   381 VYTQDDYEEYGFQGINQR 398
            ...:.:||:.|...:::|
 Worm   355 WLGKKEYEDMGASAMHKR 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp6NP_511165.1 ASKHA_NBD_Arp6 5..391 CDD:466816 102/395 (26%)
arp-1NP_497108.2 ASKHA_NBD_Arp1 8..373 CDD:466820 105/406 (26%)

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