back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG8117 and Polr3k

DIOPT Version :10

Sequence 1:	NP_573049.2	Gene:	CG8117 / 32499	FlyBaseID:	FBgn0030663	Length:	162	Species:	Drosophila melanogaster
Sequence 2:	NP_080177.1	Gene:	Polr3k / 67005	MGIID:	1914255	Length:	108	Species:	Mus musculus

Alignment Length:	154	Identity:	35/154 - (22%)
Similarity:	47/154 - (30%)	Gaps:	68/154 - (44%)

- Green bases have known domain annotations that are detailed below.

  Fly    24 PGCGDPDDMAAKLEDAIYGDLNGCKVK--------------YKNRIRSRLANLRDPKNPELRQKF 74
            ||||                 ||..|:              |.:.|..::.|.:.||..|:
Mouse     6 PGCG-----------------NGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEV---- 49

  Fly    75 LLGQITPEELSKMTPEEMASDDMKQMRQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNCSQLH 139
                                ||:..          .||....|..|.....|||. .:....||.
Mouse    50 --------------------DDVLG----------GAAAWENVDSTAEPCPKCEH-PRAYFMQLQ 83

  Fly   140 IRDGDEPIITFVIC--DECGNRWK 161
            .|..|||:.||..|  .:||:||:
Mouse    84 TRSADEPMTTFYKCCNAQCGHRWR 107

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.