DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8117 and rpb-9

DIOPT Version :9

Sequence 1:NP_573049.2 Gene:CG8117 / 32499 FlyBaseID:FBgn0030663 Length:162 Species:Drosophila melanogaster
Sequence 2:NP_505062.1 Gene:rpb-9 / 179178 WormBaseID:WBGene00022400 Length:167 Species:Caenorhabditis elegans


Alignment Length:44 Identity:11/44 - (25%)
Similarity:21/44 - (47%) Gaps:4/44 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 KTDQFKCERCDKRNC--SQLHIRDGDEPIITFVIC--DECGNRW 160
            ||::.:|..|.|...  .|...:..:|.:..:.:|  .:|.:||
 Worm   122 KTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRW 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8117NP_573049.2 TFIIS_M 3..109 CDD:284835
Zn-ribbon 118..161 CDD:295390 11/44 (25%)
rpb-9NP_505062.1 RPB9 56..167 CDD:224510 11/44 (25%)
Zn-ribbon_RPB9 116..166 CDD:259793 11/44 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.