DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sog and Chrdl1

DIOPT Version :10

Sequence 1:NP_476736.1 Gene:sog / 32498 FlyBaseID:FBgn0003463 Length:1038 Species:Drosophila melanogaster
Sequence 2:XP_006529064.1 Gene:Chrdl1 / 83453 MGIID:1933172 Length:450 Species:Mus musculus


Alignment Length:338 Identity:70/338 - (20%)
Similarity:116/338 - (34%) Gaps:108/338 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   739 NGETKCFHSGRFYNESEQWRSAQDS-----CQMCACL-RGQSSCEVIKCPALKCKSTEQLLQRDG 797
            :.:|.|....:.|...|:|....:.     |..|.|. .|...|..::||:|.|.|...:...  
Mouse    27 HSDTYCVFQDKKYRVGEKWHPYLEPYGLVYCVNCICSENGNVLCSRVRCPSLHCLSPVHIPHL-- 89

  Fly   798 ECCPSC----VP------KKEAADYSA---QSSPATNATDLLQQRRGCRLGEQFHPAGASWHPFL 849
             |||.|    :|      ..::.:|:.   |......|..|.|.|:                   
Mouse    90 -CCPRCPEDSLPPVNNKVTSKSCEYNGTTYQHGELFIAEGLFQNRQ------------------- 134

  Fly   850 PPNGFDTCTTCSCDPLTLEIRCPRLVCPPLQCSEKLAYRPDKKACCKIC---------------- 898
             ||   .|:.|||.  ...:.|....||.|.|:..::. ||  :||::|                
Mouse   135 -PN---QCSQCSCS--EGNVYCGLKTCPKLTCAFPVSV-PD--SCCRVCRGDAELSWEHADGDIF 190

  Fly   899 --PEGKQSSSNGHKTTPNNPNVLQDQAMQRSP---SH------------SAEEVLANGG------ 940
              |..:::..:..::..:.|...|...:.|.|   ||            :..:::.|..      
Mouse   191 RQPANREARHSYLRSPYDPPPNRQAGGLPRFPGSRSHRGAVIDSQQASGTIVQIVINNKHKHGQG 255

  Fly   941 --CKVVNKVYENGQEWHPILMSHGEQKCIKCRCKDSKVNCDRKRC-SRSTCQQQTRVTSKRRLFE 1002
              |....|.|.:|:.|||.|.:.|..:|:.|.|..:|..|.:..| :|..|:...::..|     
Mouse   256 KVCVSNGKTYSHGESWHPNLRAFGIVECVLCTCNVTKQECKKIHCPNRYPCKYPQKIDGK----- 315

  Fly  1003 KPDAAAPAIDECC 1015
                       ||
Mouse   316 -----------CC 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sogNP_476736.1 VWC 102..174 CDD:278520
CHRD 200..334 CDD:214804
CHRD 341..467 CDD:214804
CHRD 473..585 CDD:214804
CHRD 594..708 CDD:214804
VWC 744..803 CDD:278520 17/64 (27%)
VWC 832..898 CDD:278520 15/65 (23%)
VWC 941..1017 CDD:278520 20/76 (26%)
Chrdl1XP_006529064.1 VWC 32..94 CDD:450195 17/64 (27%)
VWC 111..174 CDD:450195 21/90 (23%)
VWC 258..320 CDD:450195 20/76 (26%)
CHRDL_1_2_C 331..450 CDD:437380
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.