DRSC/TRiP Functional Genomics Resources

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Protein Alignment sog and Chrdl2

DIOPT Version :10

Sequence 1:NP_476736.1 Gene:sog / 32498 FlyBaseID:FBgn0003463 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_001101007.1 Gene:Chrdl2 / 308854 RGDID:1306179 Length:429 Species:Rattus norvegicus


Alignment Length:319 Identity:77/319 - (24%)
Similarity:111/319 - (34%) Gaps:64/319 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   744 CFHSGRFYNESEQWRSAQDS-----CQMCACL-RGQSSCEVIKCPALKCKSTEQLLQRDGECCPS 802
            |....:.|...:.|....:.     |..|.|. .|..:|..::||.|.|   .|.:....:|||.
  Rat    33 CLFGEKIYTPGQSWHPYLEPQGTIYCVRCTCSENGHVNCYRLRCPPLHC---SQPVMEPQQCCPR 94

  Fly   803 CVPKKEAADYSAQSSPATNATDLLQQRRGCRLGEQFHPAGA--SWHPFLPPNGFDTCTTCSCDPL 865
            ||..:.             .:.|....:.|:|.|..:..|.  |.....|....:.|..|||  :
  Rat    95 CVDPRV-------------PSGLRVPLKSCQLNETTYQHGEIFSAQELFPARLSNQCVLCSC--I 144

  Fly   866 TLEIRCPRLVCPPLQCSEKLAYRPDKKACCKICPEGKQSSSNGHKTTP------NNPNVLQDQAM 924
            .....|..:.||...|...|.. ||  :||:.|.:....||.....|.      ::.:...|...
  Rat   145 EGHTYCGLMTCPEPSCPSTLPL-PD--SCCQTCKDRTTESSTEENLTQLQHGERHSQDPCSDDGK 206

  Fly   925 QRSPSHSAEEVLAN--------------GG--------------CKVVNKVYENGQEWHPILMSH 961
            :|.||..|...|::              ||              |....|.|.:|:.|||.::|.
  Rat   207 RRGPSTPAPTSLSSPLGFIPRHFQAIGMGGTTIKIILKEKHKKACTHNGKTYSHGEVWHPTVLSF 271

  Fly   962 GEQKCIKCRCKDSKVNCDRKRC-SRSTCQQQTRVTSKRRLFEKPDAAAPAIDECCSTQC 1019
            |...||.|.|.|...:|.|..| ::..|.|..:|..|.......|.|.....|..||:|
  Rat   272 GPMPCILCTCMDGYQDCHRVTCPTQYPCSQPKKVAGKCCKTCPEDEADDEHSEVISTRC 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sogNP_476736.1 VWC 102..174 CDD:278520
CHRD 200..334 CDD:214804
CHRD 341..467 CDD:214804
CHRD 473..585 CDD:214804
CHRD 594..708 CDD:214804
VWC 744..803 CDD:278520 16/64 (25%)
VWC 832..898 CDD:278520 19/67 (28%)
VWC 941..1017 CDD:278520 24/76 (32%)
Chrdl2NP_001101007.1 VWC 33..95 CDD:450195 16/64 (25%)
VWC 111..174 CDD:450195 19/67 (28%)
VWC 251..313 CDD:278520 21/61 (34%)
CHRDL_1_2_C 337..428 CDD:437380
Blue background indicates that the domain is not in the aligned region.

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