DRSC/TRiP Functional Genomics Resources

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Protein Alignment sog and crm-1

DIOPT Version :9

Sequence 1:NP_001259576.1 Gene:sog / 32498 FlyBaseID:FBgn0003463 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_741616.2 Gene:crm-1 / 179439 WormBaseID:WBGene00007103 Length:966 Species:Caenorhabditis elegans


Alignment Length:551 Identity:114/551 - (20%)
Similarity:175/551 - (31%) Gaps:187/551 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 TEHETSLIRGRLVPRPVADARDSAE---PILLKRQEHTDAQNPHAVGMAWMSIDNE--------- 624
            |:::|.|.||....:....:...:|   .:..|....||.:||..|......:.:|         
 Worm   324 TDNQTKLERGATWQKDDCTSCTCSELGAHMCEKYMCKTDCENPRKVEGQCCPVCDEPTIIRPPAT 388

  Fly   625 ------CNLHYEVTLNGVPAQDLQLYL-EEKPIEAIGAPVTRKL--------------------- 661
                  |:|.   ..||:...::..|: |..|.|....|..|:|                     
 Worm   389 CPSLELCSLR---CANGLRRDNIGCYVCECLPDEVPTNPRCRELNDENCEKQCAHGYLKDEDGCT 450

  Fly   662 ---------LEEFNGSYLEGFFLSMPSAELIKLEMSVCYLEVHSKHSKQLLLRGKLKSTKVPGHC 717
                     |.:.:...|.||       |......|:|.....||..|:   :|..||||:....
 Worm   451 VCKCSKCPPLHQCHKHCLYGF-------ETNSAGCSLCKCRASSKLDKK---QGTTKSTKLGAGS 505

  Fly   718 FPVYTDNNVPVPGDHNDNHLVNGETKCFHSGRFYNESEQWRSAQDSCQMCACLRGQSSCEVIKCP 782
            ......::.......||.|            :...:..:|.|  |.|:.|.|...|..|.:|.||
 Worm   506 AQQTEYHSEKCISFSNDGH------------QIVRDGGEWWS--DGCRHCFCENKQEFCSLISCP 556

  Fly   783 A--LKCKSTEQLLQRDGECCPSCVPKKE--------AA---DYSAQSSPATNA--TDLLQQRRGC 832
            .  ..| :.|:.:|::.||||||:.:|:        ||   :::...||.|..  ||        
 Worm   557 TKPSDC-ADEKWVQKEDECCPSCIDQKKKPKSSNSLAAQKHEHTVCQSPGTGRLFTD-------- 612

  Fly   833 RLGEQFHPAGASWHPFLPPNGFDTCTTCSCDPLTLEIRCPRLVCPPLQCSEKLAYRPDKKACCKI 897
                     |.:|.  |.|     |.:|:|  ....:.|....|||:.|... .|: :::.||..
 Worm   613 ---------GETWQ--LAP-----CVSCTC--RVGHVLCRTTECPPIACPNP-EYQ-NEEDCCPT 657

  Fly   898 CPEGKQSSSNGHKTTPNNPNVLQDQAMQRSPSHSAEEVLANGGCKVVNKVYENGQEWHP------ 956
            |||.|..::...|   .:..|..|.|               |...:|      |..|..      
 Worm   658 CPEQKVENTKNEK---GDTIVCTDDA---------------GTAHIV------GSSWRQDDCTSC 698

  Fly   957 ILMSHGEQKCIK--------CR-------------CKD---SKVNCDRK-------------RCS 984
            :..:.|...|.|        ||             |.|   |...|..:             |||
 Worm   699 VCSAEGSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQWQDGRCS 763

  Fly   985 RSTCQQQTRVTSKRRLFEKPDAAAPAIDECC 1015
            ..:|....:...::.:....|...|....||
 Worm   764 NCSCVTGGQTVCRQMVCPHCDDPVPIEGHCC 794

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sogNP_001259576.1 VWC 102..174 CDD:278520
CHRD 200..334 CDD:214804
CHRD 341..467 CDD:214804
CHRD 473..585 CDD:214804 5/12 (42%)
CHRD 594..708 CDD:214804 30/162 (19%)
VWC 744..803 CDD:278520 18/60 (30%)
VWC 832..898 CDD:278520 15/65 (23%)
VWC 941..1017 CDD:278520 20/118 (17%)
crm-1NP_741616.2 IGFBP 28..76 CDD:278641
VWC 263..319 CDD:302663
VWC 333..377 CDD:302663 8/43 (19%)
VWC 607..658 CDD:302663 17/78 (22%)
VWC 681..734 CDD:302663 9/58 (16%)
VWC 744..797 CDD:302663 9/51 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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