DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9215 and trem

DIOPT Version :9

Sequence 1:NP_573045.1 Gene:CG9215 / 32494 FlyBaseID:FBgn0030659 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:476 Identity:136/476 - (28%)
Similarity:196/476 - (41%) Gaps:95/476 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VACLVCLAEEPEASSIYGHD--PESPHMLILDKIRCCTSL--QLDSSPSQLQRWPDKICKQCHLE 74
            |.|.|||....|...:. ||  .|:....:...:..|..:  .||.:      :|||:|.:|...
  Fly    10 VVCRVCLNNPSEGEELL-HDIFSETASTRLDQMLHICAGIPVSLDDN------FPDKMCSKCVRC 67

  Fly    75 LSVSYRFHEKCT-----AVQKLFRSASRSTSTSAVFAAAAAAPPAPMLVDKQQEQLKLDLEQAHV 134
            |.:.|:|...|.     .:..|.|.||.:.       ||.......:..|...|.:....|....
  Fly    68 LRLCYKFRLTCQRSHQHIMDMLDREASNAN-------AAGEGDLLSIAEDLSVESVLKSWEDYAS 125

  Fly   135 RLPATLKIRRLNVEPCSSSSVSGTITTSTEPSEDVKEEKTDSLSLIPDGAMVLSLNDFQAQDSIT 199
            :|...:|:                     |..||.:.:           .:...:.|....|  |
  Fly   126 QLDGGMKV---------------------EGEEDQQHQ-----------VITYVVEDGDTDD--T 156

  Fly   200 QQAEEKDPKK----QQDEDEGQAKMLELDPWDDENTPEHLYE---------IETPLIEESVVASP 251
            ...:..||.:    :.:|.|..|:..|.:...:||:||...|         .|.|..||  :|..
  Fly   157 NMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKGSTGTDVATEEPPEEE--IAED 219

  Fly   252 PL----PLPPTHPANQQKKRT------YRRVSPNVKHEKLTANVDDDFKAGSTTKRRNCERSPKI 306
            .|    ...|||...::..|:      |.:.||.|          :.||.....|.|| :.|..|
  Fly   220 ILDSDEDYDPTHAKPEKCDRSGRKPVAYHKNSPKV----------ETFKKKVGRKPRN-KLSTYI 273

  Fly   307 CDVCGNTYKYQHALNAHMRRHNNERPYSCEVCQKAFISNVELRRHMRVHTGQKPYSCRHCERRFS 371
            ||||||.|..|..|..||:.|:..:|:.||:|.:.|:.|.:|.|||..|||.:||.|.:|...|:
  Fly   274 CDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFA 338

  Fly   372 DFGSSKKHERIHTGERPYVCEVCNKGFAYAHVLSAHRRTHTGKKQFQCTQCDKGFTKKTYLSAHM 436
            |..:..||.||||.||||||:||::.|.|:..|..|:..|||:|...|..|.|||.|...|..|.
  Fly   339 DRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLRLHR 403

  Fly   437 EQH--RGSGNGEASVASSSAD 455
            |.|  |.:...:|..::.:.|
  Fly   404 ETHNRRITWRNDAEESTKAED 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9215NP_573045.1 zf-AD 16..92 CDD:285071 20/84 (24%)
DUF2117 165..>273 CDD:303038 27/130 (21%)
COG5048 <303..439 CDD:227381 64/135 (47%)
C2H2 Zn finger 307..327 CDD:275368 11/19 (58%)
zf-H2C2_2 319..344 CDD:290200 9/24 (38%)
zf-C2H2 333..355 CDD:278523 9/21 (43%)
C2H2 Zn finger 335..355 CDD:275368 9/19 (47%)
zf-H2C2_2 347..371 CDD:290200 11/23 (48%)
C2H2 Zn finger 363..383 CDD:275368 7/19 (37%)
zf-H2C2_2 375..400 CDD:290200 15/24 (63%)
C2H2 Zn finger 391..411 CDD:275368 7/19 (37%)
zf-H2C2_2 404..427 CDD:290200 10/22 (45%)
C2H2 Zn finger 419..439 CDD:275368 9/19 (47%)
tremNP_650861.1 zf-AD 11..87 CDD:214871 20/82 (24%)
COG5048 <264..411 CDD:227381 69/147 (47%)
C2H2 Zn finger 274..294 CDD:275368 11/19 (58%)
zf-H2C2_2 287..311 CDD:290200 9/23 (39%)
C2H2 Zn finger 302..322 CDD:275368 9/19 (47%)
zf-H2C2_2 315..338 CDD:290200 11/22 (50%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
zf-H2C2_2 345..367 CDD:290200 15/21 (71%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
zf-H2C2_2 370..394 CDD:290200 10/23 (43%)
C2H2 Zn finger 386..406 CDD:275368 9/19 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45471446
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3C1GA
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 84 1.000 Inparanoid score I1804
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.790

Return to query results.
Submit another query.