DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9215 and ZNF540

DIOPT Version :10

Sequence 1:NP_573045.1 Gene:CG9215 / 32494 FlyBaseID:FBgn0030659 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_689819.1 Gene:ZNF540 / 163255 HGNCID:25331 Length:660 Species:Homo sapiens


Alignment Length:544 Identity:127/544 - (23%)
Similarity:202/544 - (37%) Gaps:151/544 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VSYRFHEK---C--TAVQKLFRSASRSTSTSAVFAAAAAAPPAPMLVDKQQEQLKLDLEQAHVRL 136
            |:..|.:|   |  |..:||:|........:.|....:.:.|..:.:          |||..   
Human    11 VAIDFSQKEWECLDTTQRKLYRDVMLENYNNLVSLGYSGSKPDVITL----------LEQGK--- 62

  Fly   137 PATLKIRRLNVEPCSSSSVSGTITTSTEPSEDVKEEKTDSLSLIPDGAMVLSLNDFQAQDSITQQ 201
                       |||   .|:..:|....|.. :...||..||...| ...:||    :::||.: 
Human    63 -----------EPC---VVARDVTGRQCPGL-LSRHKTKKLSSEKD-IHEISL----SKESIIE- 106

  Fly   202 AEEKDPKKQQDEDEGQAKMLEL------DPWDDENTPEHLYEIETPLIEESVVASPPLPLP---P 257
                           ::|.|.|      :.|.:::..|....::...|.:..:.|..:...   |
Human   107 ---------------KSKTLRLKGSIFRNEWQNKSEFEGQQGLKERSISQKKIVSKKMSTDRKRP 156

  Fly   258 THPANQQKKRTYRRVSPN-VKHEKLTANVDDDFK-AGST----------------TKRRNCERSP 304
            :...||:...:.:....: |:|.|:.::|..|.| .|||                .|...||:..
Human   157 SFTLNQRIHNSEKSCDSHLVQHGKIDSDVKHDCKECGSTFNNVYQLTLHQKIHTGEKSCKCEKCG 221

  Fly   305 KI---------------------CDVCGNTYKYQHALNAHMRRHNNERPYSCEVCQKAFISNVEL 348
            |:                     |..||.|:.....||.|.:.|..::||.|:.|.|.|.|.:||
Human   222 KVFSHSYQLTLHQRFHTGEKPYECQECGKTFTLYPQLNRHQKIHTGKKPYMCKKCDKGFFSRLEL 286

  Fly   349 ----------------------------RRHMRVHTGQKPYSCRHCERRFSDFGSSKKHERIHTG 385
                                        :.|.|:|||:|||.|:.|.:.||..|...:|::||||
Human   287 TQHKRIHTGKKSYECKECGKVFQLIFYFKEHERIHTGKKPYECKECGKAFSVCGQLTRHQKIHTG 351

  Fly   386 ERPYVCEVCNKGFAYAHVLSAHRRTHTGKKQFQCTQCDKGFTKKTYLSAHMEQHRGSGNGEASVA 450
            .:||.|:.|.|.|..:..|:.|||||.|||.::|.:|.|.|..:..|:.|...|.|.......|.
Human   352 VKPYECKECGKTFRLSFYLTEHRRTHAGKKPYECKECGKSFNVRGQLNRHKTIHTGIKPFACKVC 416

  Fly   451 SSSADASSRNQNASARKESARKQQQIPE---SFSLDSVELEQTKV--------LEECIVANDFMF 504
             ..|.:.|.:....:|..:..|..:..|   :|.|.||..|..::        .:||  ...|..
Human   417 -EKAFSYSGDLRVHSRIHTGEKPYECKECGKAFMLRSVLTEHQRLHTGVKPYECKEC--GKTFRV 478

  Fly   505 NEEDNAEQEANDREGLQHDDSYPY 528
            ..:.:..::.       |.|..||
Human   479 RSQISLHKKI-------HTDVKPY 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9215NP_573045.1 zf-AD 16..92 CDD:462262 6/19 (32%)
COG5048 <303..439 CDD:227381 57/184 (31%)
C2H2 Zn finger 307..327 CDD:275368 7/19 (37%)
C2H2 Zn finger 335..355 CDD:275368 9/47 (19%)
zf-H2C2_2 347..371 CDD:463886 12/51 (24%)
C2H2 Zn finger 363..383 CDD:275368 6/19 (32%)
C2H2 Zn finger 391..411 CDD:275368 8/19 (42%)
C2H2 Zn finger 419..439 CDD:275368 6/19 (32%)
ZNF540NP_689819.1 KRAB 6..66 CDD:214630 16/81 (20%)
C2H2 Zn finger 189..209 CDD:275368 4/19 (21%)
C2H2 Zn finger 217..237 CDD:275368 3/19 (16%)
COG5048 241..620 CDD:227381 76/265 (29%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
C2H2 Zn finger 301..321 CDD:275368 2/19 (11%)
C2H2 Zn finger 329..349 CDD:275368 6/19 (32%)
C2H2 Zn finger 357..377 CDD:275368 8/19 (42%)
C2H2 Zn finger 385..405 CDD:275368 6/19 (32%)
C2H2 Zn finger 413..433 CDD:275368 4/20 (20%)
C2H2 Zn finger 441..461 CDD:275368 6/19 (32%)
C2H2 Zn finger 469..489 CDD:275368 3/28 (11%)
C2H2 Zn finger 497..517 CDD:275368
C2H2 Zn finger 525..545 CDD:275368
C2H2 Zn finger 553..573 CDD:275368
C2H2 Zn finger 581..601 CDD:275368
C2H2 Zn finger 609..629 CDD:275368
zf-H2C2_2 621..646 CDD:463886
C2H2 Zn finger 637..657 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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