DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15643 and whrn

DIOPT Version :10

Sequence 1:NP_788909.1 Gene:CG15643 / 32489 FlyBaseID:FBgn0030654 Length:212 Species:Drosophila melanogaster
Sequence 2:XP_012824768.2 Gene:whrn / 100486736 XenbaseID:XB-GENE-989669 Length:996 Species:Xenopus tropicalis


Alignment Length:53 Identity:14/53 - (26%)
Similarity:20/53 - (37%) Gaps:15/53 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 HCCGVYEYCVSCC---------LHPGQQ----PLLERVLQAPNTPKYIFASVT 165
            ||..:|....:.|         |.|..|    |||..|:  |.:.:.:|...|
 Frog    65 HCLRLYHSRRNVCDLVRTLRLILRPQDQRQLFPLLRLVI--PRSDQLLFDQYT 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15643NP_788909.1 SPRING1 74..197 CDD:463004 14/53 (26%)
whrnXP_012824768.2 harmonin_N_like 40..117 CDD:448372 14/53 (26%)
PLN02983 <144..>217 CDD:215533
PDZ1_FL-whirlin 231..311 CDD:467222
PDZ2_FL-whirlin 370..453 CDD:467223
HN_L-whirlin_R2_like 513..597 CDD:259823
PDZ3_FL-whirlin-like 904..993 CDD:467224
Blue background indicates that the domain is not in the aligned region.

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