DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mh and Sprtn

DIOPT Version :9

Sequence 1:NP_573032.1 Gene:mh / 32480 FlyBaseID:FBgn0267977 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_006255870.1 Gene:Sprtn / 292101 RGDID:1559496 Length:496 Species:Rattus norvegicus


Alignment Length:539 Identity:182/539 - (33%)
Similarity:258/539 - (47%) Gaps:102/539 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 IQASHDDYLNKTMNLVDPEWELVDPTPDIYAMFIRFDEKFFQERLGAVSLEWSKKMYSCAGICYQ 160
            :||:......:.::|||..|||||||||:.|:|::|:::||..:|.||.::||.:|..|||||..
  Rat    17 VQAARRAAAREPLSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTY 81

  Fly   161 RGNRFVKQVTIRLSEPLLKLRPRKDLVETLLHEMIHAYCFVLNIREGNGGHGPNFKRIMETINKV 225
            .|..  ...:||||||||||||||||||||||||||||.||.|..:...||||.|.:.|..||::
  Rat    82 EGRG--GMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINQL 144

  Fly   226 AGTNITVYHTFHDEVASYRTHIWRCTGICRERSPFWGYVKRTSNRAPGPNDQWWKMHQRECSGTF 290
            .|.||||||||||||..||.|.|||.|.|:.:.|::|||||.:||||..:|.||..||:.|.||:
  Rat   145 TGANITVYHTFHDEVDEYRRHWWRCNGPCQHKQPYYGYVKRATNRAPSAHDYWWADHQKTCGGTY 209

  Fly   291 LKLSEPPK-APKPETKSRAKKSTPAVAAPKEDIRNWFGQPSAKKAATGTVLLGDLAKAVPPTSYP 354
            :|:.||.. |.|...|::|.|...:....|:.:.....||....:..|.| |||.:..       
  Rat   210 IKIKEPENYAKKGRGKTKAGKQPTSAVENKDKLCRGEAQPLIPFSGKGYV-LGDTSTC------- 266

  Fly   355 GLSSEPFALPKTPAAGTKGNKSGGFNELDKSGSKATTEMSGQGYSLGGSSAIEHIDLSDTDVPDS 419
                        |:|| |.|.|...|:        |..:|||.:|..|.....::::        
  Rat   267 ------------PSAG-KLNTSHMVND--------TKGLSGQDHSASGLKLDSNVEV-------- 302

  Fly   420 AKLRQIRLQRFSEDASNKRQNKKKRRRVSSDSEIINWESYDDDVMV------RDVH-TPIVN--- 474
             |..|..|       .||:.:.......:|...:::  ||...|.|      |:|: :|:.:   
  Rat   303 -KCEQNGL-------PNKKPHLVTPLPTASHQSVLS--SYFPRVSVANQKAFRNVNGSPVKSGTI 357

  Fly   475 --LVESSSDEEEMKMPAGR--------------KTMTSQERTQIIKRQVMEDELTLCEDDILLID 523
              ...|:|...:.|:|..|              .|:||...|.    ..:..|.:..||..|...
  Rat   358 DGTKHSASAGAQRKVPPSRASLRNSSKVTAPASATVTSAAGTS----AAISREESGSEDQFLNKR 418

  Fly   524 DEYDDEVAAN---ESLTAATELADQSIIDDIFGEDTLLKEFQRENDVQPSCSSYAKRIENDIVSC 585
            ...:|..|.|   |...:..:|.|.|                |...:....||..:|   .:|:|
  Rat   419 PRLEDRTALNNIKEQTQSGGDLEDSS----------------RPTAISTPRSSGGQR---RLVNC 464

  Fly   586 PICFEKMRRTELSNHFDGC 604
            |:|...:..::::.|.|.|
  Rat   465 PVCQGVVLESQINEHLDRC 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mhNP_573032.1 SprT-like 124..294 CDD:287265 96/169 (57%)
ZnF_Rad18 582..605 CDD:128973 7/23 (30%)
SprtnXP_006255870.1 SprT-like 45..213 CDD:287265 96/169 (57%)
ZnF_Rad18 461..484 CDD:128973 7/23 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340986
Domainoid 1 1.000 126 1.000 Domainoid score I5313
eggNOG 1 0.900 - - E1_KOG3931
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1171375at2759
OrthoFinder 1 1.000 - - FOG0007186
OrthoInspector 1 1.000 - - oto97466
orthoMCL 1 0.900 - - OOG6_104384
Panther 1 1.100 - - LDO PTHR21220
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5295
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.750

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