DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scamp and Scamp4

DIOPT Version :10

Sequence 1:NP_573023.2 Gene:Scamp / 32470 FlyBaseID:FBgn0040285 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_062521.1 Gene:Scamp4 / 56214 MGIID:1928947 Length:230 Species:Mus musculus


Alignment Length:216 Identity:100/216 - (46%)
Similarity:135/216 - (62%) Gaps:14/216 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 NNWPPLPDNFCVKPCFYQDFEVEIPPEFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFET 189
            ||:||||....:||||||||..|||.|.|.||||:|.:|:||..||..|::..|......|....
Mouse     6 NNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGAN 70

  Fly   190 FFLAIFYTMLFSPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGYCGFI 254
            |.||:.:.:||:|.||||||||||||||.|||||||.||||:..|.:.:::||:||:..|.||::
Mouse    71 FGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVLTVIQAIGFSGWGACGWL 135

  Fly   255 TAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRSTGASMAKAQAEFTTEFLRN 319
            .|:| |.|.:.|..|.:|:..:.|..:|:.:|  :.|.|:|.|||..|.|:.|||.|::....||
Mouse   136 AAVG-FFGTSVGAAVVMLVPAILFSLSALVMA--VTIVKVHRIYRGAGGSLQKAQTEWSAGTWRN 197

  Fly   320 QHVQEAASSAVNTAINSQFNN 340
            ...:||           |||:
Mouse   198 PPSREA-----------QFNS 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScampNP_573023.2 SCAMP 125..301 CDD:461193 87/175 (50%)
Scamp4NP_062521.1 SCAMP 20..179 CDD:461193 79/161 (49%)

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