DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp5 and sum3

DIOPT Version :10

Sequence 1:NP_573020.2 Gene:Prp5 / 32464 FlyBaseID:FBgn0030631 Length:1224 Species:Drosophila melanogaster
Sequence 2:NP_588033.1 Gene:sum3 / 2538689 PomBaseID:SPCC1795.11 Length:636 Species:Schizosaccharomyces pombe


Alignment Length:449 Identity:163/449 - (36%)
Similarity:257/449 - (57%) Gaps:29/449 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   484 TAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGR 548
            |..:.||| .|:. ::|.| |..:|:..:....::...::.::..|:.:|||:|..:||.:.|||
pombe   146 TGINFEKY-DDIP-VEVSG-GDIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207

  Fly   549 DLIGIAKTGSGKTLAFILPMFRHILDQ-----PSMED-GDG-------AIAIIMAPTRELCMQIG 600
            ||:..|:||||||..|:.|:.....|:     |..:| |.|       ...:|:||||||..||.
pombe   208 DLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272

  Fly   601 KDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVV 665
            ::.|||.....:||..||||..|..||.::.:|.:::..||||::|::  :.||: :|..:.::|
pombe   273 EESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLI--DRGRI-SLANIKFLV 334

  Fly   666 LDEADRMFDMGFEPQVMRIIDNVR----PDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSV 726
            |||||||.|||||||:..|::...    .:|||:||||||||.::.|||..||..:.:.||....
pombe   335 LDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGS 399

  Fly   727 VCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGI 791
            ..:.:.|.||.:.|..|...||::|......|..::||:.:..||.|...|:.:::|..|:||..
pombe   400 TSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDR 464

  Fly   792 DQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGS 856
            .|.:|:..:..|:||:..:::||:||:||||:.::..|:|||:|...:|||||.|||||||..|.
pombe   465 TQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQ 529

  Fly   857 AYTFITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKG 915
            |..|........|.::|..:..:....|:.|.|:     |.:.:.|.. ..||.:||:|
pombe   530 AVAFFNRNNKGIAKELIELLQEANQECPSFLIAM-----ARESSFGGN-GRGGRYSGRG 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp5NP_573020.2 Trypan_PARP <291..383 CDD:368653
DEAD-like_helicase_N 454..899 CDD:475120 157/431 (36%)
KH-I_DDX46 1121..1223 CDD:411901
sum3NP_588033.1 SrmB 171..550 CDD:440279 144/381 (38%)
Blue background indicates that the domain is not in the aligned region.

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