DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp5 and Y54G11A.3

DIOPT Version :10

Sequence 1:NP_573020.2 Gene:Prp5 / 32464 FlyBaseID:FBgn0030631 Length:1224 Species:Drosophila melanogaster
Sequence 2:NP_496973.1 Gene:Y54G11A.3 / 175083 WormBaseID:WBGene00013214 Length:504 Species:Caenorhabditis elegans


Alignment Length:508 Identity:175/508 - (34%)
Similarity:273/508 - (53%) Gaps:62/508 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   416 TLKKGEVIEQNMDSLEYSSEDELED---------IRD------TAVNLAMKHRKELAKIDHSSVT 465
            ||.:.....:.:.::|.|.||.|:|         :||      ...||:.:..:||.........
 Worm     3 TLVQKPAEPEPLKTIESSIEDRLKDENFSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKV 67

  Fly   466 YAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQC-GVSKKEMEVLRRLG 529
            | |||:...|::                            |.|:.::.|. |.:...|..:|:.|
 Worm    68 Y-PFREESTVKI----------------------------PPPVNSFEQAFGSNASIMGEIRKNG 103

  Fly   530 FEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHI------LDQPSMEDGDGAIAII 588
            ||||:|||.|..|.::||:|.||:::|||||||||:||...||      .::...|.......::
 Worm   104 FEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLV 168

  Fly   589 MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSG 653
            ::|||||..||..:::|:|.: |.:.||:|||....||:...:.|.||::.||||:.|:  :|.|
 Worm   169 LSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDL--SNDG 230

  Fly   654 RVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIE 718
             |.:|..||||||||||||.|||||..:.||:..:||||...:.|||:|..:..|..:..|:.:.
 Worm   231 -VISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVM 294

  Fly   719 VIVGGRSVV-CKEVEQHVVILNDDAKFFKLLELLGIYQEAG----SIIVFVDKQENADILLRDLM 778
            .:.|...:. ||.|.|....:..|::|.::.|::.....|.    .:|:||..:..||.|..|..
 Worm   295 AVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFC 359

  Fly   779 KASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVH 843
            ........||||..|.||:.::...:||:|::|:||.:|:||:||.|:..|:|||.|...|:|||
 Worm   360 MKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVH 424

  Fly   844 RCGRTGRAGKKGSAYTFI-TPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYK 895
            |.|||||||:||.|.:|: ..::|.:.| :|:.::.|...:|.:|:....:|:
 Worm   425 RVGRTGRAGRKGEAMSFLWWNDRSNFEG-LIQILEKSEQEVPDQLRRDAEKYR 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp5NP_573020.2 Trypan_PARP <291..383 CDD:368653
DEAD-like_helicase_N 454..899 CDD:475120 163/455 (36%)
KH-I_DDX46 1121..1223 CDD:411901
Y54G11A.3NP_496973.1 SrmB 84..499 CDD:440279 154/398 (39%)
Blue background indicates that the domain is not in the aligned region.

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