DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp5 and ddx43

DIOPT Version :10

Sequence 1:NP_573020.2 Gene:Prp5 / 32464 FlyBaseID:FBgn0030631 Length:1224 Species:Drosophila melanogaster
Sequence 2:NP_001315122.1 Gene:ddx43 / 100136871 ZFINID:ZDB-GENE-080204-77 Length:719 Species:Danio rerio


Alignment Length:710 Identity:232/710 - (32%)
Similarity:347/710 - (48%) Gaps:122/710 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 GIGLATKAEADIKKEPPPVDTKKEIKKKPEPVAAKMEIVEEPTVAAGEKTKKEPEQPHVGAKSEP 357
            |.|:|...:..:..:|.||.:    .:.|.|..|:    ...|.:||.|         .|...|.
Zfish    10 GDGVAVSKQLTLPAKPAPVKS----WRPPSPRGAR----NRETSSAGAK---------FGGDGEQ 57

  Fly   358 EVEDKPQPEAEPEDEIDPLDAYMQEVNNEMR-RVNNFVNPPAKSQGV------------------ 403
            .|..:.:     :.:.|..|....:.|:..| |:.     |.:|:|.                  
Zfish    58 WVNWRNR-----DSDFDVFDGAAGKNNSYSRSRIG-----PTRSRGYADRGDSSSVTLNVENSLV 112

  Fly   404 --VILTGVAK------------KKTTTLKKGEVIEQNMDSLEYSSEDELEDI------------- 441
              :|..|.||            |.|....:.||:.......::.::|.:||:             
Zfish   113 GRIIGRGGAKIRELQESSGASIKITRGAHEAEVLICGSCDAQHKAKDMIEDLVHENMGGSGYRNG 177

  Fly   442 ------------RDTAVNLAMKHRKELAKIDHSSV-------------TYAPFRKNFYVEVPELT 481
                        ..:||..|.........||.:|:             .....:||||:|...:.
Zfish   178 NSSQGYQNNSCWSASAVKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVLKKNFYIEAKSVA 242

  Fly   482 RMTAADVEKYRSDLEGIQVKG------KGCPKPIKTWAQC-----GVSKKEMEVLRRLGFEKPTP 535
            ..:|.:|:.:|.:...|.|..      :..|.|:.|:.:.     |:    ||.:.|:||:||||
Zfish   243 ARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPGI----MENIVRVGFKKPTP 303

  Fly   536 IQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMED-GDGAIAIIMAPTRELCMQI 599
            ||.||.|.:::|.||||||:||:|||||::||.|.|:..||...| .:|...:::.|||||.:||
Zfish   304 IQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLTPTRELALQI 368

  Fly   600 GKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYV 664
            ..:..|:|.. |.:.:|:|||...:.||..:..|.:|::.||||:.|:   ....:.|||.:||:
Zfish   369 EAECNKYSYK-GFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDL---QMNELINLRSITYL 429

  Fly   665 VLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVC- 728
            ||||||||.|||||||:|:||.::||||||||.|||:|..:..||:..||.|:.|.||...:.. 
Zfish   430 VLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAV 494

  Fly   729 KEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQ 793
            ..|:|.|:.:.:|.|...:.:.:...:....:::||.|:..||.|..||........||||..:|
Zfish   495 NTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQ 559

  Fly   794 FDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAY 858
            .||:..:.|||.|:||:|:||.:|:|||||.|:..|.|||.|.:.|:||||.|||||||:.|.:.
Zfish   560 CDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESV 624

  Fly   859 TFITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEY-KALQEAE--GKTVHTGGGFSGKG 915
            |.:|.|..|.|.::|..::.||..:|.||..:...| |..:|.|  |.....|||..|.|
Zfish   625 TLVTREDWRVAAELITILERSGQDVPEELVLMAERYEKHRREKEMFGPRSGRGGGGGGGG 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp5NP_573020.2 Trypan_PARP <291..383 CDD:368653 18/89 (20%)
DEAD-like_helicase_N 454..899 CDD:475120 186/471 (39%)
KH-I_DDX46 1121..1223 CDD:411901
ddx43NP_001315122.1 KH-I_DDX43_DDX53 102..167 CDD:411858 11/64 (17%)
SrmB 287..669 CDD:440279 171/389 (44%)
Blue background indicates that the domain is not in the aligned region.

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