DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC6 and HDA15

DIOPT Version :10

Sequence 1:NP_001259569.1 Gene:HDAC6 / 32461 FlyBaseID:FBgn0026428 Length:1179 Species:Drosophila melanogaster
Sequence 2:NP_850609.2 Gene:HDA15 / 821382 AraportID:AT3G18520 Length:564 Species:Arabidopsis thaliana


Alignment Length:424 Identity:160/424 - (37%)
Similarity:222/424 - (52%) Gaps:55/424 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 VLRHWIGGPPPMDRYPTRDTAIPLPPEKLTSNAARLQVLRAETKLSVPSFKVCYAYDAQMLLHC- 546
            :|||.....|..     :||.:....||...:::      |.:..:|       .:|.:||||. 
plant   117 ILRHGYLASPFF-----KDTGLIEVEEKYGGSSS------ATSSTAV-------GFDERMLLHSE 163

  Fly   547 -NLNDTGHPEQPSRIQHIHKMHDDYGLLK-QMKQLSPRAATTDEVCLAHTRAH---VNTVRRLLG 606
             .:....|||:|.|::.|.......|:.. :...::.|..|..|:.:.||..|   |:|..:|| 
plant   164 FEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPINAREITKQELQMVHTSEHVDAVDTTSQLL- 227

  Fly   607 REPKELHDAAGIYNSVYLHPRTFDCATLAAGLVLQAVDSVLRGESRSGICNVRPPGHHAEQDHPH 671
                    .:...:..|.:..:...|.|||||.......:..|..::|...||||||||...|..
plant   228 --------YSYFTSDTYANEYSARAARLAAGLCADLATDIFTGRVKNGFALVRPPGHHAGVRHAM 284

  Fly   672 GFCIFNNVAIAAQYAIRDFGLERVLIVDWDVHHGNGTQHIFESNPKVLYISLHRYEHGSFFPKGP 736
            |||:.||.|:||..| :..|.::|||||||||||||||.|||.|..||||||||:|.|:|:|  .
plant   285 GFCLHNNAAVAALVA-QAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYP--G 346

  Fly   737 DGNFDVVGKGAGRGFNVNIPWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGFDAAIGDPL 801
            .|..|.||...|.|:.||:||:..|:||.:|..|||.:::|||..|:|..|::|||||||.||||
plant   347 TGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPL 411

  Fly   802 GGCKVTAEGYGMLTHWLSALASGRIIVCLEGGYNVNSISYAMTMCTKTLLGD------PVPTPQL 860
            |.|.||..||..:|..|..|..|:::|.||||||:.|||.:.|...|.|||:      |:.|   
plant   412 GCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENPENELPIAT--- 473

  Fly   861 GATALQKPPTVAFQSCVESLQQCLQVQRNHWRSL 894
                   .|:||   .::::...|.:|...|.||
plant   474 -------TPSVA---GLQTVLDVLNIQLEFWPSL 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC6NP_001259569.1 HDAC10_HDAC6-dom1 119..457 CDD:212526
HDAC6-dom2 538..895 CDD:212527 150/369 (41%)
zf-UBP 1007..1069 CDD:460464
HDA15NP_850609.2 HDAC_classII 171..461 CDD:212518 132/301 (44%)
Blue background indicates that the domain is not in the aligned region.

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