DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC6 and hdac9b

DIOPT Version :9

Sequence 1:NP_001259569.1 Gene:HDAC6 / 32461 FlyBaseID:FBgn0026428 Length:1179 Species:Drosophila melanogaster
Sequence 2:XP_005158021.1 Gene:hdac9b / 393789 ZFINID:ZDB-GENE-040109-7 Length:609 Species:Danio rerio


Alignment Length:510 Identity:104/510 - (20%)
Similarity:173/510 - (33%) Gaps:150/510 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 KRRARNNML---KNQGCGSQESVTDIFQNAVNSKSLVRKPTALIYDESMSQHCCLWDKEHYECPE 130
            :|:.:..:|   |.|....|..:|: ||.  ..::|||:..|.|     .:|..|..:.|....:
Zfish    73 ERQLQQELLLIQKQQQIQKQLLITE-FQK--QHENLVRQHQAQI-----QEHLKLQQELHVMKQQ 129

  Fly   131 RFTRVLERCRELNLTERCLELPSRSATKDEILRLHTEEHFERLKETSGIRDDERMEELSSRYDSI 195
            :.....||..||...||.||   |...:.::|.|...   ||.:| |.:..:|..::|.      
Zfish   130 QEQLEKERKLELQSQERELE---RHRREQQVLVLRNR---ERTRE-SAVASNEVKQKLQ------ 181

  Fly   196 YIHPSTFELSLLASGSTIELVDHLVAGKAQNGMAIIRPPGHHAMKAE----YNGYCFFNNVAL-A 255
                     ..|.|.||.::..:.:..|......:.....||....:    ..|......::| :
Zfish   182 ---------EFLLSKSTKDITLNGIPQKITQSSKLWYTASHHTSLEQSSPPLGGASSSCKISLPS 237

  Fly   256 TQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDPRVVYFS--------------IHRFEHGSFWP 306
            .|...|...|::.:                 ::|.:...|              :.|.|.....|
Zfish   238 PQDYRDDFPLRKTV-----------------SEPNLKVRSRLKQKVAERRSSPLLRRKEGNIMTP 285

  Fly   307 ------HLHESDYHAIGSGAGTGYNFNVPLNATGMTNG-DYLAIF---------QQLLLP----- 350
                  .|.||...:...|:|.. :.|...:|.|..|| ..|.:.         .:||.|     
Zfish   286 FKKRALELLESTASSSAPGSGPS-SPNGACSALGAENGPSSLPVTTRTERWPSQSRLLGPESSVS 349

  Fly   351 -VALEFQPELIIVSAGY-------DAALGCPEGEME------VTPACYPHLLNPL-LRLADARVA 400
             :.|...|.|..:|.|:       .||||..|..::      |.......||.|: |.:.:.:|:
Zfish   350 MLNLYTSPSLPNISLGFSAASSPISAALGLQEKHVDNGAVSAVIQGLPTQLLGPVPLSVMETKVS 414

  Fly   401 VVLEGGYCLDSLAEGAALTLRSLLGD-------PCP-PLVETVP------LPR---------AEL 442
            ...:.  .|..|.:...|..:.:|..       |.| .::|..|      |||         |.|
Zfish   415 SSHQA--LLQHLLQKEQLRHQKILSSGQSPVHPPSPLAMMENSPSSTRPKLPRHRPLNRTQSAPL 477

  Fly   443 AQALLSCIAVHRPHWRCLQLQQTYD-------------------CVELQDRDKEE 478
            .|:.|:.:.:.:.|...|:.|:.|.                   .|.||:.::||
Zfish   478 PQSTLAQLVIQQQHQSFLEKQKQYQQQVHINKMLSKSIEQLRQPNVHLQESEEEE 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC6NP_001259569.1 HDAC10_HDAC6-dom1 119..457 CDD:212526 81/415 (20%)
HDAC6-dom2 538..895 CDD:212527
zf-UBP 1007..1069 CDD:280334
hdac9bXP_005158021.1 ClassIIa_HDAC9_Gln-rich-N 68..157 CDD:197399 25/94 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100220
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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