DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC6 and F43G6.17

DIOPT Version :10

Sequence 1:NP_001259569.1 Gene:HDAC6 / 32461 FlyBaseID:FBgn0026428 Length:1179 Species:Drosophila melanogaster
Sequence 2:NP_001263677.1 Gene:F43G6.17 / 24104581 WormBaseID:WBGene00219378 Length:281 Species:Caenorhabditis elegans


Alignment Length:242 Identity:60/242 - (24%)
Similarity:101/242 - (41%) Gaps:87/242 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 TNGDYLAIFQQLLLPVALEFQPELIIVSAGYDAALGCPEGEME----VTPACYPHLLNPLLRLAD 396
            :.|||:::|..:||.:..:||||||::|||:|:  |..:..||    |....|.|:...|.::..
 Worm     3 SEGDYVSVFHHVLLTMLEQFQPELILISAGFDS--GYYDVMMEFGQGVKANGYGHMACLLNQICP 65

  Fly   397 ARVAVVLEGGYCLDSLAEGAALTLRSLLGDPCPPLVETVPLPRAELAQALLSCIAVHRPHWRCLQ 461
            .::..:|||||...:..|.|::.:|.||         .:|:||.::.:.:...:           
 Worm    66 GKILAILEGGYHPYNYTESASMMVRGLL---------NLPIPRLDIPERISGAL----------- 110

  Fly   462 LQQTYDCVELQDRDKEEDLHTVLRH---WIGGPPPMDRYPTRDTAIPLPPEKLTSNAARLQVLRA 523
            |:.|::               :|.|   |         ||           ||   ..||::|..
 Worm   111 LETTWN---------------ILNHHSEW---------YP-----------KL---GERLKLLEH 137

  Fly   524 ETK-LSVPSFKVCYAYDAQMLLHCNLNDTGHPEQPSRIQHIHKMHDD 569
            :.| |.:|.|    |:|..|.|.               :.:.||:||
 Worm   138 QQKELGLPQF----AFDQTMFLG---------------EKMRKMYDD 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC6NP_001259569.1 HDAC10_HDAC6-dom1 119..457 CDD:212526 36/124 (29%)
HDAC6-dom2 538..895 CDD:212527 7/32 (22%)
zf-UBP 1007..1069 CDD:460464
F43G6.17NP_001263677.1 Arginase_HDAC <1..125 CDD:450134 41/167 (25%)
Blue background indicates that the domain is not in the aligned region.

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