DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC6 and F43G6.4

DIOPT Version :9

Sequence 1:NP_001259569.1 Gene:HDAC6 / 32461 FlyBaseID:FBgn0026428 Length:1179 Species:Drosophila melanogaster
Sequence 2:NP_496519.2 Gene:F43G6.4 / 174810 WormBaseID:WBGene00009657 Length:270 Species:Caenorhabditis elegans


Alignment Length:106 Identity:23/106 - (21%)
Similarity:41/106 - (38%) Gaps:25/106 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 NSKSLVRKPTALIYDESMSQHCCLWDKEHYECPERFTRV-------LERCRELNLTERCLELPSR 154
            :|:|...:...||.||.....|.:       |.|:....       ||:       ||.:...:.
 Worm    71 SSRSESPQTKKLILDEDGCATCSV-------CTEKVPEAEWNSHIELEK-------ERLISYITL 121

  Fly   155 SATKDEILRLHTEEHFERLK----ETSGIRDDERMEELSSR 191
            :..|.|..|.:|.:||::.:    |...||:::...:...|
 Worm   122 TKEKRERDRENTPDHFDQKRKRELELQRIRNNQNKRQSLKR 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC6NP_001259569.1 HDAC10_HDAC6-dom1 119..457 CDD:212526 16/84 (19%)
HDAC6-dom2 538..895 CDD:212527
zf-UBP 1007..1069 CDD:280334
F43G6.4NP_496519.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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