DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC6 and Hdac10

DIOPT Version :10

Sequence 1:NP_001259569.1 Gene:HDAC6 / 32461 FlyBaseID:FBgn0026428 Length:1179 Species:Drosophila melanogaster
Sequence 2:NP_001403078.1 Gene:Hdac10 / 170787 MGIID:2158340 Length:667 Species:Mus musculus


Alignment Length:793 Identity:253/793 - (31%)
Similarity:377/793 - (47%) Gaps:145/793 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 TALIYDESMSQHCCLWDKE--HYECPERFTRVLERCRELNLTERCLELPSRSATKDEILRLHTEE 168
            |||:|.|.|:....|||..  ..|||||.|..|:..|:..|.||||.|.:..|:::|:..:|:.|
Mouse     3 TALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEERCLCLSACEASEEELGLVHSPE 67

  Fly   169 HFERLKETSGIRDDERMEELSSRYDSIYIHPSTFELSLLASGSTIELVDHLVAGKAQNGMAIIRP 233
            :...:::|..: |.|.:..||.:|:::|.||.||..:.||:|:.::|||.::.|...||:|::||
Mouse    68 YIALVQKTQTL-DKEELHALSKQYNAVYFHPDTFHCARLAAGAALQLVDAVLTGAVHNGLALVRP 131

  Fly   234 PGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDPRVVYFSIHR 298
            ||||:.:|..||:|.|||||||.:||...:.||||||:|:|||||||.|..|.:||.|:|||.||
Mouse   132 PGHHSQRAAANGFCVFNNVALAAKHAKQKYGLQRILIVDWDVHHGQGIQYIFNDDPSVLYFSWHR 196

  Fly   299 FEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQLLLPVALEFQPELIIVS 363
            :|||||||.|.|||..|:|.|.|.|:..|:|.|..||.|.||||.|..:|||:|.||.|||::||
Mouse   197 YEHGSFWPFLPESDADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVS 261

  Fly   364 AGYDAALGCPEGEMEVTPACYPHLLNPLLRLADARVAVVLEGGYCLDSLAEGAALTLRSLLGDPC 428
            ||:|:|:|.|||:|:.||.|:.||...|..||..|:..||||||.|:|||:...:.:::|||||.
Mouse   262 AGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPT 326

  Fly   429 PPLVETVPLPRAELAQALLSCIAVHRPHWRCLQLQQTYDCVELQDRDKEEDLHTVLRHWIGGPPP 493
            |||:..: :|.....:::.|......|:|..||                :::..||......|  
Mouse   327 PPLLGLM-VPCQSALESIQSVQTAQTPYWTSLQ----------------QNVAPVLSSSTHSP-- 372

  Fly   494 MDRYPTRDTAIPLPPEKLTSNAARLQVLRAETKLSVPSFKVCYAYDAQMLLHCNLNDTGHPEQPS 558
                  .:.::.|..|..|...       ||..||....::|.                .|..| 
Mouse   373 ------EERSLRLLGESPTCAV-------AEDSLSPLLDQLCL----------------RPAPP- 407

  Fly   559 RIQHIHKMHDDYGLLKQMKQLSPRAATTDEVCLAHTRAHVNTVRRLLGREPKELHDAAGIYNS-- 621
                         :...:....|.||    :||                .|..||....:...  
Mouse   408 -------------ICTAVASTVPGAA----LCL----------------PPGVLHQEGSVLREET 439

  Fly   622 ---VYLHPRTF---DCATLAAGLVLQAVDSVLRGESRSGICNVRPPGHHAEQDHPHGFCIFNNVA 680
               ..||...|   |.|||  |.:|..:|.::.|:.|:.|.........|..|          |.
Mouse   440 EAWARLHKSRFQDEDLATL--GKILCLLDGIMDGQIRNAIATTTALATAATLD----------VL 492

  Fly   681 IAAQYAIRDFGLERVLIVDWDVHHGNGTQHIFESNPKVLYISLHRYEHGSFFPKGPDGNFDVVGK 745
            |....|.|   .:|||.|  .:...:....:.:...::|::::          :|.|.....:  
Mouse   493 IQRCLARR---AQRVLCV--ALGQLDRPLDLADDGRRILWLNI----------RGKDAAIQSM-- 540

  Fly   746 GAGRGFNVNIPWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGFDAAIGDPLGGCKVTAEG 810
                 |:.:.|..:...|.|...|.   |::|:||.|.|.:||::.|       |..|.: .|:.
Mouse   541 -----FHFSTPLPQTTGGFLSLILG---LVLPLAYGFQPDMVLMALG-------PAHGLQ-NAQA 589

  Fly   811 YGMLTHWLSALASGRIIVCLEGGYNVNSISYAMTMCTKTLLGDPVPT--PQLGATALQKPPTVAF 873
             .:|...|.:...|||:..:|    ..||........:.|.|:..|:  |...||..:....:..
Mouse   590 -ALLAAMLRSPVGGRILAVVE----EESIRLLARSLAQALHGETPPSLGPFSKATPEEIQALMFL 649

  Fly   874 QSCVESLQQCLQV 886
            ::.:|:..:.|||
Mouse   650 KARLEARWKLLQV 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC6NP_001259569.1 HDAC10_HDAC6-dom1 119..457 CDD:212526 162/339 (48%)
HDAC6-dom2 538..895 CDD:212527 71/359 (20%)
zf-UBP 1007..1069 CDD:460464
Hdac10NP_001403078.1 Histone deacetylase 1..323 158/320 (49%)
Arginase_HDAC 18..354 CDD:450134 161/337 (48%)
Blue background indicates that the domain is not in the aligned region.

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