DRSC/TRiP Functional Genomics Resources

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Protein Alignment Top1 and AT4G26701

DIOPT Version :9

Sequence 1:NP_001014742.1 Gene:Top1 / 32458 FlyBaseID:FBgn0004924 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001119063.1 Gene:AT4G26701 / 6241184 AraportID:AT4G26701 Length:69 Species:Arabidopsis thaliana


Alignment Length:60 Identity:34/60 - (56%)
Similarity:49/60 - (81%) Gaps:0/60 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   906 QLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKTQRTKFLWAV 965
            :::|:|.....:::.||:||||||:||:||||:|||||:|:.||||||||:...||.||:
plant     2 KIEKMERDMQTKEDLKTVALGTSKINYMDPRITVAWCKRHEAPIEKIFNKSLLEKFAWAM 61

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Top1NP_001014742.1 Topoisomer_IB_N_htopoI_like 441..655 CDD:239570
TOPEUc 585..946 CDD:214661 21/39 (54%)
Topoisom_I 657..859 CDD:279380
Topo_C_assoc 905..972 CDD:291068 34/60 (57%)
AT4G26701NP_001119063.1 Topo_C_assoc 2..67 CDD:405119 34/60 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 89 1.000 Domainoid score I2690
eggNOG 1 0.900 - - E1_COG3569
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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