DRSC/TRiP Functional Genomics Resources

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Protein Alignment Top1 and timm22

DIOPT Version :9

Sequence 1:NP_001014742.1 Gene:Top1 / 32458 FlyBaseID:FBgn0004924 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001011397.1 Gene:timm22 / 496870 XenbaseID:XB-GENE-5754351 Length:186 Species:Xenopus tropicalis


Alignment Length:93 Identity:23/93 - (24%)
Similarity:34/93 - (36%) Gaps:36/93 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 SKEEKLIKKNENEALMKEFGF-----CMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQA 604
            |:|:|::     |.:|:..||     |        :|.|.|  .|.|              .:..
 Frog    48 SEEQKMM-----ERVMESCGFKAALAC--------VGGFVL--GGAF--------------GVFT 83

  Fly   605 SDVSINCGKDSKVPSPPPGSRWKEVRHD 632
            :.:..|.|.|.|.|...|.:  |||..|
 Frog    84 AGIDTNVGFDPKDPYRTPTA--KEVLKD 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Top1NP_001014742.1 Topoisomer_IB_N_htopoI_like 441..655 CDD:239570 23/93 (25%)
TOPEUc 585..946 CDD:214661 11/48 (23%)
Topoisom_I 657..859 CDD:279380
Topo_C_assoc 905..972 CDD:291068
timm22NP_001011397.1 Tim17 60..182 CDD:280604 18/76 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 331 1.000 Domainoid score I1157
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 822 1.000 Inparanoid score I459
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001157
OrthoInspector 1 1.000 - - otm49460
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X783
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.050

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