DRSC/TRiP Functional Genomics Resources

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Protein Alignment Top1 and top1mt

DIOPT Version :9

Sequence 1:NP_001014742.1 Gene:Top1 / 32458 FlyBaseID:FBgn0004924 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001001838.1 Gene:top1mt / 415098 ZFINID:ZDB-GENE-040624-2 Length:600 Species:Danio rerio


Alignment Length:559 Identity:364/559 - (65%)
Similarity:443/559 - (79%) Gaps:15/559 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   431 WEEEKRADGVKWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCT 495
            |||.|..|.||||:||||||.|||.||.:|.|:.|||||:.::||..|||.||||||||:|:|.|
Zfish    42 WEEGKSCDAVKWSSLEHKGPYFAPDYEPLPANICFYYDGQQVKLSPLTEEIATFYAKMLDHEYTT 106

  Fly   496 KEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 560
            ||||..|||||:||.||..||::|....||:|..:..||..::|::|..:||||.:.|:|...||
Zfish   107 KEVFQKNFFKDWRKEMTKEERKLITTLSKCDFTHIHKYFVEKAEEKKNMTKEEKQVLKDEAARLM 171

  Fly   561 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSR 625
            :|||:|::|||:||||||:|||||||||||||||||.:|:|||..||:|||.||||:|.||.|.:
Zfish   172 EEFGYCLLDGHREKIGNFKLEPPGLFRGRGEHPKMGRLKKRIQPEDVAINCSKDSKIPEPPAGHK 236

  Fly   626 WKEVRHDNTVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEW 690
            ||.|:|||||||||||:||:..:.||||||||||||||||..||||||||.:.:..||..|..:|
Zfish   237 WKRVQHDNTVTWLASWLENIPKRPKYIMLNPSSKLKGEKDWQKYETARRLKECVKSIRKRYMQDW 301

  Fly   691 KSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPG 755
            ||:||:.|||.||:|||||||||||||||::.|||||||||||||::|||.|:|.::||.|||.|
Zfish   302 KSREMKSRQRGVAIYFIDKLALRAGNEKDDESADTVGCCSLRVEHIRLHKHLDGLDHVVEFDFLG 366

  Fly   756 KDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASK 820
            ||||||||:|.|||:|||||:||::||...||||||::|..||:.|.|.|.|||||||||:|||.
Zfish   367 KDSIRYYNKVPVEKQVFKNLKLFIKHKDPEDDLFDRISTVNLNKALTESMSGLTAKVFRTFNAST 431

  Fly   821 TLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKC 885
            |||.||:.||....||.||:|:||||||||||||||||:.||:.||||:.|:|||:.|:|.||:.
Zfish   432 TLQDQLNKLTSDDCTVEEKILSYNRANRAVAILCNHQRAAPKTFEKSMQLLQEKIQKKKEQIEEA 496

  Fly   886 -----ESEYHSRD----------EKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDP 935
                 |::...:|          |||.|.::||.||||||:||||||:|||.|||||||||||||
Zfish   497 RKELKEAKQVDKDTPSDKSSKLVEKKQKAVQRLCDQLKKLQLQETDREENKVIALGTSKLNYLDP 561

  Fly   936 RISVAWCKKHDVPIEKIFNKTQRTKFLWAVHMADENYRF 974
            ||:|||||||.||||||||||.|.||.||:.|.||:::|
Zfish   562 RITVAWCKKHQVPIEKIFNKTHREKFAWAIDMTDESFQF 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Top1NP_001014742.1 Topoisomer_IB_N_htopoI_like 441..655 CDD:239570 135/213 (63%)
TOPEUc 585..946 CDD:214661 252/375 (67%)
Topoisom_I 657..859 CDD:279380 141/201 (70%)
Topo_C_assoc 905..972 CDD:291068 55/66 (83%)
top1mtNP_001001838.1 Topoisomer_IB_N_htopoI_like 52..266 CDD:239570 135/213 (63%)
TOPEUc 196..571 CDD:214661 251/374 (67%)
Topoisom_I 268..470 CDD:279380 141/201 (70%)
Prefoldin 477..548 CDD:298833 33/70 (47%)
Topo_C_assoc 531..598 CDD:291068 55/66 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 319 1.000 Domainoid score I1218
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62324
OrthoDB 1 1.010 - - D208288at33208
OrthoFinder 1 1.000 - - FOG0001157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101409
Panther 1 1.100 - - LDO PTHR10290
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X783
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.930

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