DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gce and ARNT2

DIOPT Version :9

Sequence 1:NP_001188593.1 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_055677.3 Gene:ARNT2 / 9915 HGNCID:16876 Length:717 Species:Homo sapiens


Alignment Length:591 Identity:122/591 - (20%)
Similarity:201/591 - (34%) Gaps:177/591 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 SPAHGNPPGFYP----NMWYPNAPYGSAGAAGSAGGAVSGGRYMGYGPGGVPGGTNSG------P 215
            :||..|||....    ::..|.||..:.|....||...:.|           |...||      .
Human     3 TPAAVNPPEMASDIPGSVTLPVAPMAATGQVRMAGAMPARG-----------GKRRSGMDFDDED 56

  Fly   216 GAGPGAMQAAYPGHSAHMHALHHQYPQPHPHAHHPQHPHHSPHPHHPHPHETMMEMFQLSNSGRE 280
            |.||                                                       |...||
Human    57 GEGP-------------------------------------------------------SKFSRE 66

  Fly   281 ARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAHALRLKHAFGNS--------- 336
            ..:..|:.||:|:...|.|||.|||..:...|:.||..:||.|...::.....||.         
Human    67 NHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMRGTGNKSTDGAYKPS 131

  Fly   337 -LMQQRPQITDTLMDMLDSFFLTLTCH-GHILLISASIEQHLGHCQSDLYGQSIMQITHPEDQNM 399
             |.:|  ::...:::..|.|...:... |.::.:|.|:...|...||:.:|.::.:..||:|...
Human   132 FLTEQ--ELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGSTLYEQVHPDDVEK 194

  Fly   400 LKQQLIPTE---LENLFDAH-GDSDAEGEPRQRSKAEEDAIDRKLREDRRSF--RVRLARA---- 454
            |::||..:|   ...:.|.. |....||   |:|..      |.....||||  |:|...|    
Human   195 LREQLCTSENSMTGRILDLKTGTVKKEG---QQSSM------RMCMGSRRSFICRMRCGNAPLDH 250

  Fly   455 -----------------GPRSEPTA-YEVVKIDGCFRRSDEAPRGVRSNHFSSNLQLIRRTRGRD 501
                             ||..|..| |.||...|..:.  ..|.|:                   
Human   251 LPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGYIKA--WPPAGM------------------- 294

  Fly   502 DVIPLHTISGND----------IILTGCARIIRPPKIASRLIDANTL----EYKTRHLIDGRIID 552
                  ||...|          ::..|..::...|.    .:|.|.:    |:.:||..||.|..
Human   295 ------TIPEEDADVGQGSKYCLVAIGRLQVTSSPV----CMDMNGMSVPTEFLSRHNSDGIITF 349

  Fly   553 CDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQ 617
            .|.|...|.||...::.......|.|.:|...:..:.:|:...........||..|:|...:.::
Human   350 VDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWMLIR 414

  Fly   618 SKGYLEIDKETNKVHSFVCVNTLLGEEEGKRRVQEMKKK--FSVIINTQIPQSTIDVPASEHPA- 679
            :..:...:..::::...:|.||.:.:.:.::...|:.::  .|....:|:|  ..::||..|.| 
Human   415 TSSFTFQNPYSDEIEYIICTNTNVKQLQQQQAELEVHQRDGLSSYDLSQVP--VPNLPAGVHEAG 477

  Fly   680 -LLEKA 684
             .:|||
Human   478 KSVEKA 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_001188593.1 HLH 279..325 CDD:238036 19/45 (42%)
PAS 352..>405 CDD:238075 14/53 (26%)
PAS_11 539..646 CDD:291273 22/106 (21%)
ARNT2NP_055677.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 5/16 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..74 13/104 (13%)
bHLH-PAS_ARNT 62..124 CDD:381517 21/61 (34%)
PAS 137..243 CDD:395786 28/114 (25%)
PAS_11 336..436 CDD:405306 20/99 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 548..717
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144532
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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